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3PKY

Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA, UTP and Manganese.

Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE UTP A 301
ChainResidue
APHE64
AGLN230
ATHR236
ATHR237
AILE238
AARG244
AMN302
AMN303
AHOH305
DDA6
AHIS111
AASP137
AASP139
ASER172
ASER174
ALYS175
AGLY176
AHIS178

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN A 302
ChainResidue
AASP137
AASP139
AHIS178
AUTP301

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 303
ChainResidue
AASP137
AASP139
AASP227
AUTP301
AHOH307

site_idAC4
Number of Residues19
DetailsBINDING SITE FOR RESIDUE UTP B 301
ChainResidue
BPHE64
BHIS111
BASP137
BASP139
BSER172
BSER174
BLYS175
BGLY176
BHIS178
BGLN230
BTHR236
BTHR237
BILE238
BARG244
BMN302
BMN303
BHOH305
BHOH314
CDG4

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 302
ChainResidue
BASP137
BASP139
BHIS178
BUTP301
BMN303

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 303
ChainResidue
BASP137
BASP139
BASP227
BUTP301
BMN302
BHOH305

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues62
DetailsDNA binding: {"description":"Interaction with target DNA"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues504
DetailsRegion: {"description":"DNA repair polymerase domain (Pol); interacts with Ku"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues32
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17174332","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

250835

PDB entries from 2026-03-18

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