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3PJ9

Crystal structure of a Nucleoside Diphosphate Kinase from Campylobacter jejuni

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004550molecular_functionnucleoside diphosphate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
A0009117biological_processnucleotide metabolic process
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0004550molecular_functionnucleoside diphosphate kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
B0009117biological_processnucleotide metabolic process
B0016301molecular_functionkinase activity
B0016740molecular_functiontransferase activity
B0046872molecular_functionmetal ion binding
C0000166molecular_functionnucleotide binding
C0004550molecular_functionnucleoside diphosphate kinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006183biological_processGTP biosynthetic process
C0006228biological_processUTP biosynthetic process
C0006241biological_processCTP biosynthetic process
C0009117biological_processnucleotide metabolic process
C0016301molecular_functionkinase activity
C0016740molecular_functiontransferase activity
C0046872molecular_functionmetal ion binding
D0000166molecular_functionnucleotide binding
D0004550molecular_functionnucleoside diphosphate kinase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0006183biological_processGTP biosynthetic process
D0006228biological_processUTP biosynthetic process
D0006241biological_processCTP biosynthetic process
D0009117biological_processnucleotide metabolic process
D0016301molecular_functionkinase activity
D0016740molecular_functiontransferase activity
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 138
ChainResidue
ALYS9
ATYR49
AHIS115
AHOH324

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 138
ChainResidue
BLYS97
BHOH279
AALA98
BARG85
BGLY89
BALA90
BALA96

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 138
ChainResidue
BARG55
CLYS9
CTYR49
CHIS52
CHIS115
CHOH189
CHOH191

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 139
ChainResidue
BARG55
CARG85
CMET88
CTHR91
CARG102
CHOH189
CHOH191

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 138
ChainResidue
DLYS9
DTYR49
DHIS115
DHOH154
DHOH229

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 139
ChainResidue
ALYS36
AVAL38
APHE130
BLYS132

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 139
ChainResidue
BARG85
BALA90
BTHR91
BHOH147
BHOH326

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 140
ChainResidue
ATHR91
AARG102
AHOH181
AHOH324

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 140
ChainResidue
BLYS9
BARG102
BASN112
BHIS115
BHOH177
BHOH294

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 139
ChainResidue
DSER119
DLEU120
DGLU121

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 141
ChainResidue
ALYS36
APHE130
APHE131
ALYS132
AASN134
AHOH148
AHOH180

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 140
ChainResidue
AARG31
AALA33
DLYS37
DPRO69

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NavHGSDSL
ChainResidueDetails
AASN112-LEU120

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Pros-phosphohistidine intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_00451","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00451","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

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