Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3PFY

The catalytic domain of human OTUD5

Functional Information from GO Data
ChainGOidnamespacecontents
A0004843molecular_functioncysteine-type deubiquitinase activity
A0016579biological_processprotein deubiquitination
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PEG A 400
ChainResidue
AASP238
AHOH460
AGLU241
AGLU241
AVAL242
AVAL242
AHOH404
AHOH404
AHOH417
AHOH460

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 401
ChainResidue
ALYS216
AASP231
AGLN232
AGLY235
AVAL334
AHOH439
AHOH447

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PG4 A 402
ChainResidue
AGLU197
AGLN199
ATRP202
ATYR257

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 403
ChainResidue
ALYS219
AARG227
AHOH449
AHOH484

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsRegion: {"description":"Variable-loop","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"22245969","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33110214","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"33110214","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

250359

PDB entries from 2026-03-11

PDB statisticsPDBj update infoContact PDBjnumon