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3PFE

Crystal structure of a M20A metallo peptidase (dapE, lpg0809) from Legionella pneumophila subsp. pneumophila str. philadelphia 1 at 1.50 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0005829cellular_componentcytosol
A0006508biological_processproteolysis
A0016787molecular_functionhydrolase activity
A0016805molecular_functiondipeptidase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AHIS96
AASP129
AGLU162
AASP190
AZN502
AHOH926

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AZN501
AGOL518
AHOH926
AASP129
AGLU163
AHIS442

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 503
ChainResidue
AHIS52
AASP264
ACL507
ACL508

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 504
ChainResidue
AGLU410
ACL505
AIMD513
AHOH1002

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL A 505
ChainResidue
ASER226
AARG305
AGLU410
AGLY411
AZN504
AIMD513
AHOH941

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 506
ChainResidue
ASER224
AASN327
AVAL328
AHIS442
AHOH692

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 507
ChainResidue
AHIS52
AASP264
AZN503

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 508
ChainResidue
AGLN48
AHIS52
AASP264
AZN503

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 509
ChainResidue
APHE424
APRO425
ALYS426
AHOH681

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 510
ChainResidue
AHIS223
AARG340
ATHR413
AHOH692

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 511
ChainResidue
AGLY105
ATRP106
AHOH823
AHOH890

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 512
ChainResidue
AASP37
AALA38

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE IMD A 513
ChainResidue
AHIS223
ASER226
AGLU410
ALEU435
AZN504
ACL505
AGOL518
AHOH555

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 514
ChainResidue
AGLN269
AGLN272
ATYR407
AHOH601
AHOH627

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 515
ChainResidue
AGLN240
AASN249
APRO363
ATYR364
AHOH712

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 516
ChainResidue
ATHR250
AGLY251
AGLU252
AASN304
AARG308
AHOH540
AHOH580
AHOH666
AHOH1034

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 517
ChainResidue
ALYS58
AGLU68
AILE69
AHOH664
AHOH998

site_idBC9
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A 518
ChainResidue
AASP190
AHIS223
AGLU410
AGLY412
AILE414
ALEU435
AHIS442
AZN502
AIMD513
AHOH768
AHOH926

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 519
ChainResidue
AGLN423
AHOH545
AHOH788
ALYS177
AGLU178
AGLY181

site_idCC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 520
ChainResidue
AGLY165
ASER166
AGLY375
AGLY376
ASER377
AHOH613
AHOH714
AHOH964

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 521
ChainResidue
ASER107
ALEU110
ALYS118

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 522
ChainResidue
AHIS438
AHIS449
AHOH706
AHOH833
AHOH868

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 523
ChainResidue
AHIS35
ASER164
ATYR167
AHOH835

site_idCC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 524
ChainResidue
AGLU41
AGLU42
ATYR259
ACYS260
AASP261
AHOH910
AHOH991

221051

PDB entries from 2024-06-12

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