Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3PEY

S. cerevisiae Dbp5 bound to RNA and ADP BeF3

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ADP A 1000
ChainResidue
APHE112
AARG429
APHE430
AMG1001
ABEF1002
AHOH1025
AHOH1035
AHOH1058
AHOH1085
AHOH1094
AHOH1095
ALYS114
AHOH1119
AHOH1216
AHOH1481
AGLN119
AGLY141
ATHR142
AGLY143
ALYS144
ATHR145
AASP395

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1001
ChainResidue
AADP1000
ABEF1002
AHOH1010
AHOH1095
AHOH1096
AHOH1481

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE BEF A 1002
ChainResidue
ASER140
ALYS144
AGLU240
AGLY393
AARG426
AARG429
AADP1000
AMG1001
AHOH1010
AHOH1012
AHOH1096
AHOH1168
AHOH1481

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MG A 1003
ChainResidue
AASP264
AHOH1117
AHOH1125
AHOH1147
AHOH1148
AHOH1228
AHOH1234
AHOH1320
AHOH1356

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1004
ChainResidue
AHOH1200
AHOH1215
AHOH1349
AHOH1403
AHOH1477
AHOH1483

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NO3 A 1005
ChainResidue
ALYS105
APHE188
AILE255
ALYS258
AARG259
AILE285

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NO3 A 1006
ChainResidue
AARG132
AASN288
AARG463
APRO465
AHOH1044
AHOH1334

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NO3 A 1007
ChainResidue
ALYS205
AASN208
AARG224
AARG256
AHOH1176
AHOH1278

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1008
ChainResidue
ATHR189
ALYS190
AILE191
AARG225
ALYS226
AHOH1091
AHOH1143
AHOH1338
AHOH1392

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NO3 B 1009
ChainResidue
AGLN253
BU4
BU5

Functional Information from PROSITE/UniProt
site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. VLDEADNmL
ChainResidueDetails
AVAL237-LEU245

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues167
DetailsDomain: {"description":"Helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues177
DetailsDomain: {"description":"Helicase C-terminal","evidences":[{"source":"PROSITE-ProRule","id":"PRU00542","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues28
DetailsMotif: {"description":"Q motif"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsMotif: {"description":"DEAD box"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon