3PD5
Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with an analog of threonyl-adenylate
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004829 | molecular_function | threonine-tRNA ligase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0008270 | molecular_function | zinc ion binding |
| B | 0004829 | molecular_function | threonine-tRNA ligase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0008270 | molecular_function | zinc ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 500 |
| Chain | Residue |
| A | LYS16 |
| A | HOH3039 |
| A | HOH3049 |
| B | LYS128 |
| site_id | AC2 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE TSB A 501 |
| Chain | Residue |
| A | ALA82 |
| A | LEU88 |
| A | ALA89 |
| A | ALA94 |
| A | PHE117 |
| A | GLY118 |
| A | TYR120 |
| A | HOH3006 |
| A | HOH3007 |
| A | ALA19 |
| A | LEU20 |
| A | ILE43 |
| A | VAL45 |
| A | PHE81 |
| site_id | AC3 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE TSB B 502 |
| Chain | Residue |
| B | ALA19 |
| B | LEU20 |
| B | ILE43 |
| B | VAL45 |
| B | PHE81 |
| B | ALA82 |
| B | LEU88 |
| B | ALA89 |
| B | PHE117 |
| B | GLY118 |
| B | TYR120 |
| B | HOH3027 |
| B | HOH3028 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 142 |
| Details | Region: {"description":"Editing domain","evidences":[{"source":"HAMAP-Rule","id":"MF_00184","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"15908961","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"16902403","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"21098258","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"26113036","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
