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3PCL

STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 2-HYDROXYISONICOTINIC ACID N-OXIDE AND CYANIDE

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005506molecular_functioniron ion binding
A0008199molecular_functionferric iron binding
A0009056biological_processcatabolic process
A0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
A0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
A0042952biological_processbeta-ketoadipate pathway
A0051213molecular_functiondioxygenase activity
B0003824molecular_functioncatalytic activity
B0005506molecular_functioniron ion binding
B0008199molecular_functionferric iron binding
B0009056biological_processcatabolic process
B0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
B0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
B0042952biological_processbeta-ketoadipate pathway
B0051213molecular_functiondioxygenase activity
C0003824molecular_functioncatalytic activity
C0005506molecular_functioniron ion binding
C0008199molecular_functionferric iron binding
C0009056biological_processcatabolic process
C0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
C0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
C0042952biological_processbeta-ketoadipate pathway
C0051213molecular_functiondioxygenase activity
D0003824molecular_functioncatalytic activity
D0005506molecular_functioniron ion binding
D0008199molecular_functionferric iron binding
D0009056biological_processcatabolic process
D0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
D0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
D0042952biological_processbeta-ketoadipate pathway
D0051213molecular_functiondioxygenase activity
E0003824molecular_functioncatalytic activity
E0005506molecular_functioniron ion binding
E0008199molecular_functionferric iron binding
E0009056biological_processcatabolic process
E0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
E0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
E0042952biological_processbeta-ketoadipate pathway
E0051213molecular_functiondioxygenase activity
F0003824molecular_functioncatalytic activity
F0005506molecular_functioniron ion binding
F0008199molecular_functionferric iron binding
F0009056biological_processcatabolic process
F0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
F0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
F0042952biological_processbeta-ketoadipate pathway
F0051213molecular_functiondioxygenase activity
M0003824molecular_functioncatalytic activity
M0005506molecular_functioniron ion binding
M0008199molecular_functionferric iron binding
M0009056biological_processcatabolic process
M0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
M0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
M0019619biological_process3,4-dihydroxybenzoate catabolic process
M0042952biological_processbeta-ketoadipate pathway
M0046872molecular_functionmetal ion binding
M0051213molecular_functiondioxygenase activity
N0003824molecular_functioncatalytic activity
N0005506molecular_functioniron ion binding
N0008199molecular_functionferric iron binding
N0009056biological_processcatabolic process
N0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
N0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
N0019619biological_process3,4-dihydroxybenzoate catabolic process
N0042952biological_processbeta-ketoadipate pathway
N0046872molecular_functionmetal ion binding
N0051213molecular_functiondioxygenase activity
O0003824molecular_functioncatalytic activity
O0005506molecular_functioniron ion binding
O0008199molecular_functionferric iron binding
O0009056biological_processcatabolic process
O0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
O0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
O0019619biological_process3,4-dihydroxybenzoate catabolic process
O0042952biological_processbeta-ketoadipate pathway
O0046872molecular_functionmetal ion binding
O0051213molecular_functiondioxygenase activity
P0003824molecular_functioncatalytic activity
P0005506molecular_functioniron ion binding
P0008199molecular_functionferric iron binding
P0009056biological_processcatabolic process
P0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
P0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
P0019619biological_process3,4-dihydroxybenzoate catabolic process
P0042952biological_processbeta-ketoadipate pathway
P0046872molecular_functionmetal ion binding
P0051213molecular_functiondioxygenase activity
Q0003824molecular_functioncatalytic activity
Q0005506molecular_functioniron ion binding
Q0008199molecular_functionferric iron binding
Q0009056biological_processcatabolic process
Q0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Q0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
Q0019619biological_process3,4-dihydroxybenzoate catabolic process
Q0042952biological_processbeta-ketoadipate pathway
Q0046872molecular_functionmetal ion binding
Q0051213molecular_functiondioxygenase activity
R0003824molecular_functioncatalytic activity
R0005506molecular_functioniron ion binding
R0008199molecular_functionferric iron binding
R0009056biological_processcatabolic process
R0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
R0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
R0019619biological_process3,4-dihydroxybenzoate catabolic process
R0042952biological_processbeta-ketoadipate pathway
R0046872molecular_functionmetal ion binding
R0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CYN M 575
ChainResidue
AGLY14
APRO15
ATYR16
MTYR408
MHIS462
MINO550
MFE600
MHOH602

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE M 600
ChainResidue
MTYR408
MHIS460
MHIS462
MINO550
MCYN575

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CYN N 575
ChainResidue
BGLY14
BPRO15
BTYR16
BHOH241
NTYR408
NHIS462
NINO550
NFE600

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE N 600
ChainResidue
NTYR408
NHIS460
NHIS462
NINO550
NCYN575

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CYN O 575
ChainResidue
CPRO15
CTYR16
CHOH207
OTYR408
OHIS462
OINO550
OFE600

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE O 600
ChainResidue
OTYR408
OHIS460
OHIS462
OINO550
OCYN575

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CYN P 575
ChainResidue
DPRO15
DTYR16
DHOH711
PTYR408
PHIS462
PINO550
PFE600

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE P 600
ChainResidue
PTYR408
PHIS460
PHIS462
PINO550
PCYN575

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CYN Q 575
ChainResidue
EPRO15
ETYR16
EHOH204
QTYR408
QHIS462
QINO550
QFE600

site_idACA
Number of Residues33
DetailsSITE "ACA" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
ChainResidue
ATHR12
MTRP400
MTYR408
MASP413
MTYR447
MPRO448
MTRP449
MARG450
MARG457
MHIS460
MHIS462
AALA13
MGLN477
MILE491
MINO550
MCYN575
MFE600
MHOH601
MHOH602
MHOH620
MHOH623
MHOH631
AGLY14
MHOH632
MHOH740
MHOH741
MHOH742
APRO15
ATYR16
AARG133
AGLY134
MTYR324
MTHR326

site_idACB
Number of Residues33
DetailsSITE "ACB" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
ChainResidue
BTHR12
BALA13
BGLY14
BPRO15
BTYR16
BARG133
BGLY134
NTYR324
NTHR326
NTRP400
NTYR408
NASP413
NTYR447
NPRO448
NTRP449
NARG450
NARG457
NHIS460
NHIS462
NGLN477
NILE491
NINO550
NCYN575
NFE600
NHOH605
BHOH241
NHOH626
NHOH629
NHOH637
NHOH638
NHOH751
NHOH752
NHOH754

site_idACC
Number of Residues33
DetailsSITE "ACC" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
ChainResidue
CTHR12
CALA13
CGLY14
CPRO15
CTYR16
CARG133
CGLY134
OTYR324
OTHR326
OTRP400
OTYR408
OASP413
OTYR447
OPRO448
OTRP449
OARG450
OARG457
OHIS460
OHIS462
OGLN477
OILE491
OINO550
OCYN575
OFE600
CHOH206
CHOH207
OHOH627
OHOH630
OHOH639
OHOH640
OHOH754
OHOH755
OHOH757

site_idACD
Number of Residues33
DetailsSITE "ACD" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
ChainResidue
DTHR12
DALA13
DGLY14
DPRO15
DTYR16
DARG133
DGLY134
PTYR324
PTHR326
PTRP400
PTYR408
PASP413
PTYR447
PPRO448
PTRP449
PARG450
PARG457
PHIS460
PHIS462
PGLN477
PILE491
PINO550
PCYN575
PFE600
PHOH608
DHOH711
PHOH625
PHOH628
PHOH636
PHOH637
PHOH745
PHOH746
PHOH747

site_idACE
Number of Residues33
DetailsSITE "ACE" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
ChainResidue
ETHR12
EALA13
EGLY14
EPRO15
ETYR16
EARG133
EGLY134
QTYR324
QTHR326
QTRP400
QTYR408
QASP413
QTYR447
QPRO448
QTRP449
QARG450
QARG457
QHIS460
QHIS462
QGLN477
QILE491
QINO550
QCYN575
QFE600
QHOH945
EHOH204
QHOH978
QHOH983
QHOH998
QHOH999
QHOH1172
QHOH1173
QHOH1175

site_idACF
Number of Residues33
DetailsSITE "ACF" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
ChainResidue
FTHR12
FALA13
FGLY14
FPRO15
FTYR16
FARG133
FGLY134
RTYR324
RTHR326
RTRP400
RTYR408
RASP413
RTYR447
RPRO448
RTRP449
RARG450
RARG457
RHIS460
RHIS462
RGLN477
RILE491
RINO550
RCYN575
RFE600
RHOH1180
RHOH1181
RHOH1213
RHOH1218
RHOH1233
RHOH1234
RHOH1407
RHOH1408
RHOH1410

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE Q 600
ChainResidue
QTYR408
QHIS460
QHIS462
QINO550
QCYN575

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CYN R 575
ChainResidue
FGLY14
FPRO15
FTYR16
RTYR408
RHIS462
RINO550
RFE600
RHOH1181

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE R 600
ChainResidue
RTYR408
RHIS460
RHIS462
RINO550
RCYN575

site_idBC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE INO M 550
ChainResidue
APRO15
AARG133
MTYR324
MTYR408
MTRP449
MARG457
MHIS460
MHIS462
MILE491
MCYN575
MFE600
MHOH740
MHOH742

site_idBC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE INO N 550
ChainResidue
BPRO15
NTYR324
NTYR408
NTYR447
NTRP449
NARG457
NHIS460
NHIS462
NILE491
NCYN575
NFE600
NHOH751
NHOH754

site_idBC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE INO O 550
ChainResidue
CPRO15
CARG133
OTYR324
OTYR408
OTRP449
OARG457
OHIS460
OHIS462
OGLN477
OILE491
OCYN575
OFE600
OHOH754
OHOH757

site_idBC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE INO P 550
ChainResidue
DPRO15
PTYR324
PTYR408
PTYR447
PTRP449
PARG457
PHIS460
PHIS462
PCYN575
PFE600
PHOH745
PHOH747

site_idBC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE INO Q 550
ChainResidue
EPRO15
EARG133
QTYR324
QTYR408
QTYR447
QTRP449
QARG457
QHIS460
QHIS462
QGLN477
QILE491
QCYN575
QFE600
QHOH1172
QHOH1175

site_idBC9
Number of Residues13
DetailsBINDING SITE FOR RESIDUE INO R 550
ChainResidue
FPRO15
FARG133
RTYR324
RTYR408
RTRP449
RARG457
RHIS460
RHIS462
RILE491
RCYN575
RFE600
RHOH1407
RHOH1410

site_idVEA
Number of Residues29
DetailsSITE "VEA" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
ChainResidue
ATYR79
AVAL114
AASN115
AASN116
AALA117
AALA118
AMET122
AHIS125
AASN127
AARG142
AVAL157
MASP304
MARG307
MILE339
MPRO340
MGLN341
MSER342
MILE343
MSER344
MGLU345
AHOH218
MHOH629
MHOH636
AHOH228
MHOH643
AHOH231
MHOH659
AHOH242
AHOH263

site_idVEB
Number of Residues29
DetailsSITE "VEB" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
ChainResidue
BTYR79
BVAL114
BASN115
BASN116
BALA117
BALA118
BMET122
BHIS125
BASN127
BARG142
BVAL157
NASP304
NARG307
NILE339
NPRO340
NGLN341
NSER342
NILE343
NSER344
NGLU345
BHOH281
BHOH289
NHOH642
BHOH307
NHOH650
BHOH316
NHOH664
BHOH357
NHOH723

site_idVEC
Number of Residues29
DetailsSITE "VEC" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
ChainResidue
CTYR79
CVAL114
CASN115
CASN116
CALA117
CALA118
CMET122
CHIS125
CASN127
CARG142
CVAL157
OASP304
OARG307
OILE339
OPRO340
OGLN341
OSER342
OILE343
OSER344
OGLU345
CHOH221
OHOH637
OHOH644
CHOH232
OHOH651
CHOH235
OHOH666
CHOH246
CHOH267

site_idVED
Number of Residues29
DetailsSITE "VED" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
ChainResidue
DTYR79
DVAL114
DASN115
DASN116
DALA117
DALA118
DMET122
DHIS125
DASN127
DARG142
DVAL157
PASP304
PARG307
PILE339
PPRO340
PGLN341
PSER342
PILE343
PSER344
PGLU345
DHOH751
PHOH634
PHOH642
DHOH777
PHOH649
DHOH786
PHOH664
DHOH827
DHOH895

site_idVEE
Number of Residues29
DetailsSITE "VEE" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
ChainResidue
ETYR79
EVAL114
EASN115
EASN116
EALA117
EALA118
EMET122
EHIS125
EASN127
EARG142
EVAL157
QASP304
QARG307
QILE339
QPRO340
QGLN341
QSER342
QILE343
QSER344
QGLU345
EHOH218
QHOH994
QHOH1005
EHOH228
QHOH1019
EHOH231
QHOH1044
EHOH242
QHOH1130

site_idVEF
Number of Residues29
DetailsSITE "VEF" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
ChainResidue
FTYR79
FVAL114
FASN115
FASN116
FALA117
FALA118
FMET122
FHIS125
FASN127
FARG142
FVAL157
RASP304
RARG307
RILE339
RPRO340
RGLN341
RSER342
RILE343
RSER344
RGLU345
FHOH1221
FHOH1229
RHOH1240
FHOH1247
RHOH1254
FHOH1256
RHOH1279
FHOH1297
FHOH1365

Functional Information from PROSITE/UniProt
site_idPS00083
Number of Residues29
DetailsINTRADIOL_DIOXYGENAS Intradiol ring-cleavage dioxygenases signature. LlGqVydgnGhlVrdsfLEVwqadanGeY
ChainResidueDetails
ALEU51-TYR79
MVAL380-TYR408

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:7990141
ChainResidueDetails
MARG409
OPRO448
OILE461
OPHE463
PARG409
PPRO448
PILE461
PPHE463
QARG409
QPRO448
QILE461
MPRO448
QPHE463
RARG409
RPRO448
RILE461
RPHE463
MILE461
MPHE463
NARG409
NPRO448
NILE461
NPHE463
OARG409

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
MTYR447
MARG457

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
NTYR447
NARG457

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
OTYR447
OARG457

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
PTYR447
PARG457

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
QTYR447
QARG457

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
RTYR447
RARG457

site_idMCSA1
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
MARG409metal ligand
MPRO448metal ligand, proton shuttle (general acid/base)
MPRO458electrostatic stabiliser
MILE461metal ligand
MPHE463metal ligand

site_idMCSA2
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
NARG409metal ligand
NPRO448metal ligand, proton shuttle (general acid/base)
NPRO458electrostatic stabiliser
NILE461metal ligand
NPHE463metal ligand

site_idMCSA3
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
OARG409metal ligand
OPRO448metal ligand, proton shuttle (general acid/base)
OPRO458electrostatic stabiliser
OILE461metal ligand
OPHE463metal ligand

site_idMCSA4
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
PARG409metal ligand
PPRO448metal ligand, proton shuttle (general acid/base)
PPRO458electrostatic stabiliser
PILE461metal ligand
PPHE463metal ligand

site_idMCSA5
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
QARG409metal ligand
QPRO448metal ligand, proton shuttle (general acid/base)
QPRO458electrostatic stabiliser
QILE461metal ligand
QPHE463metal ligand

site_idMCSA6
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
RARG409metal ligand
RPRO448metal ligand, proton shuttle (general acid/base)
RPRO458electrostatic stabiliser
RILE461metal ligand
RPHE463metal ligand

227111

PDB entries from 2024-11-06

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