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3PCK

STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 6-HYDROXYNICOTINIC ACID N-OXIDE

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005506molecular_functioniron ion binding
A0006725biological_processobsolete cellular aromatic compound metabolic process
A0008199molecular_functionferric iron binding
A0016491molecular_functionoxidoreductase activity
A0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
A0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
A0019439biological_processobsolete aromatic compound catabolic process
A0042952biological_processbeta-ketoadipate pathway
A0051213molecular_functiondioxygenase activity
B0003824molecular_functioncatalytic activity
B0005506molecular_functioniron ion binding
B0006725biological_processobsolete cellular aromatic compound metabolic process
B0008199molecular_functionferric iron binding
B0016491molecular_functionoxidoreductase activity
B0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
B0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
B0019439biological_processobsolete aromatic compound catabolic process
B0042952biological_processbeta-ketoadipate pathway
B0051213molecular_functiondioxygenase activity
C0003824molecular_functioncatalytic activity
C0005506molecular_functioniron ion binding
C0006725biological_processobsolete cellular aromatic compound metabolic process
C0008199molecular_functionferric iron binding
C0016491molecular_functionoxidoreductase activity
C0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
C0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
C0019439biological_processobsolete aromatic compound catabolic process
C0042952biological_processbeta-ketoadipate pathway
C0051213molecular_functiondioxygenase activity
D0003824molecular_functioncatalytic activity
D0005506molecular_functioniron ion binding
D0006725biological_processobsolete cellular aromatic compound metabolic process
D0008199molecular_functionferric iron binding
D0016491molecular_functionoxidoreductase activity
D0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
D0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
D0019439biological_processobsolete aromatic compound catabolic process
D0042952biological_processbeta-ketoadipate pathway
D0051213molecular_functiondioxygenase activity
E0003824molecular_functioncatalytic activity
E0005506molecular_functioniron ion binding
E0006725biological_processobsolete cellular aromatic compound metabolic process
E0008199molecular_functionferric iron binding
E0016491molecular_functionoxidoreductase activity
E0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
E0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
E0019439biological_processobsolete aromatic compound catabolic process
E0042952biological_processbeta-ketoadipate pathway
E0051213molecular_functiondioxygenase activity
F0003824molecular_functioncatalytic activity
F0005506molecular_functioniron ion binding
F0006725biological_processobsolete cellular aromatic compound metabolic process
F0008199molecular_functionferric iron binding
F0016491molecular_functionoxidoreductase activity
F0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
F0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
F0019439biological_processobsolete aromatic compound catabolic process
F0042952biological_processbeta-ketoadipate pathway
F0051213molecular_functiondioxygenase activity
M0003824molecular_functioncatalytic activity
M0005506molecular_functioniron ion binding
M0006725biological_processobsolete cellular aromatic compound metabolic process
M0008199molecular_functionferric iron binding
M0016491molecular_functionoxidoreductase activity
M0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
M0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
M0019439biological_processobsolete aromatic compound catabolic process
M0019619biological_process3,4-dihydroxybenzoate catabolic process
M0042952biological_processbeta-ketoadipate pathway
M0046872molecular_functionmetal ion binding
M0051213molecular_functiondioxygenase activity
N0003824molecular_functioncatalytic activity
N0005506molecular_functioniron ion binding
N0006725biological_processobsolete cellular aromatic compound metabolic process
N0008199molecular_functionferric iron binding
N0016491molecular_functionoxidoreductase activity
N0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
N0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
N0019439biological_processobsolete aromatic compound catabolic process
N0019619biological_process3,4-dihydroxybenzoate catabolic process
N0042952biological_processbeta-ketoadipate pathway
N0046872molecular_functionmetal ion binding
N0051213molecular_functiondioxygenase activity
O0003824molecular_functioncatalytic activity
O0005506molecular_functioniron ion binding
O0006725biological_processobsolete cellular aromatic compound metabolic process
O0008199molecular_functionferric iron binding
O0016491molecular_functionoxidoreductase activity
O0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
O0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
O0019439biological_processobsolete aromatic compound catabolic process
O0019619biological_process3,4-dihydroxybenzoate catabolic process
O0042952biological_processbeta-ketoadipate pathway
O0046872molecular_functionmetal ion binding
O0051213molecular_functiondioxygenase activity
P0003824molecular_functioncatalytic activity
P0005506molecular_functioniron ion binding
P0006725biological_processobsolete cellular aromatic compound metabolic process
P0008199molecular_functionferric iron binding
P0016491molecular_functionoxidoreductase activity
P0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
P0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
P0019439biological_processobsolete aromatic compound catabolic process
P0019619biological_process3,4-dihydroxybenzoate catabolic process
P0042952biological_processbeta-ketoadipate pathway
P0046872molecular_functionmetal ion binding
P0051213molecular_functiondioxygenase activity
Q0003824molecular_functioncatalytic activity
Q0005506molecular_functioniron ion binding
Q0006725biological_processobsolete cellular aromatic compound metabolic process
Q0008199molecular_functionferric iron binding
Q0016491molecular_functionoxidoreductase activity
Q0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Q0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
Q0019439biological_processobsolete aromatic compound catabolic process
Q0019619biological_process3,4-dihydroxybenzoate catabolic process
Q0042952biological_processbeta-ketoadipate pathway
Q0046872molecular_functionmetal ion binding
Q0051213molecular_functiondioxygenase activity
R0003824molecular_functioncatalytic activity
R0005506molecular_functioniron ion binding
R0006725biological_processobsolete cellular aromatic compound metabolic process
R0008199molecular_functionferric iron binding
R0016491molecular_functionoxidoreductase activity
R0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
R0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
R0019439biological_processobsolete aromatic compound catabolic process
R0019619biological_process3,4-dihydroxybenzoate catabolic process
R0042952biological_processbeta-ketoadipate pathway
R0046872molecular_functionmetal ion binding
R0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE M 600
ChainResidue
MTYR408
MHIS460
MHIS462
MNNO550
MHOH744

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE N 600
ChainResidue
NTYR408
NHIS460
NHIS462
NNNO550
NHOH853

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE O 600
ChainResidue
OTYR408
OHIS460
OHIS462
ONNO550
OHOH891

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE P 600
ChainResidue
PTYR408
PHIS460
PHIS462
PNNO550
PHOH784

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE Q 600
ChainResidue
QTYR408
QHIS460
QHIS462
QNNO550
QHOH776

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE R 600
ChainResidue
RTYR408
RHIS460
RHIS462
RNNO550
RHOH891

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME M 601
ChainResidue
MHIS361
MCYS429
MLEU430
MSER438
MHOH702

site_idAC8
Number of Residues12
DetailsBINDING SITE FOR RESIDUE NNO M 550
ChainResidue
APRO15
MTYR324
MTYR408
MTRP449
MARG457
MHIS460
MHIS462
MILE491
MFE600
MHOH741
MHOH743
MHOH744

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE BME N 601
ChainResidue
NHIS361
NCYS429
NSER438

site_idACA
Number of Residues33
DetailsSITE "ACA" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
ChainResidue
ATHR12
MTRP400
MTYR408
MASP413
MTYR447
MPRO448
MTRP449
MARG450
MARG457
MHIS460
MHIS462
AALA13
MGLN477
MILE491
MNNO550
MFE600
AHOH605
AHOH606
MHOH625
MHOH628
MHOH635
MHOH636
AGLY14
MHOH741
MHOH742
MHOH743
MHOH744
APRO15
ATYR16
AARG133
AGLY134
MTYR324
MTHR326

site_idACB
Number of Residues33
DetailsSITE "ACB" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
ChainResidue
BTHR12
BALA13
BGLY14
BPRO15
BTYR16
BARG133
BGLY134
NTYR324
NTHR326
NTRP400
NTYR408
NASP413
NTYR447
NPRO448
NTRP449
NARG450
NARG457
NHIS460
NHIS462
NGLN477
NILE491
NNNO550
NFE600
NHOH706
BHOH606
NHOH726
NHOH729
NHOH736
NHOH737
NHOH849
NHOH850
NHOH852
NHOH853

site_idACC
Number of Residues33
DetailsSITE "ACC" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
ChainResidue
CTHR12
CALA13
CGLY14
CPRO15
CTYR16
CARG133
CGLY134
OTYR324
OTHR326
OTRP400
OTYR408
OASP413
OTYR447
OPRO448
OTRP449
OARG450
OARG457
OHIS460
OHIS462
OGLN477
OILE491
ONNO550
OFE600
OHOH743
CHOH606
OHOH763
OHOH765
OHOH774
OHOH775
OHOH888
OHOH889
OHOH890
OHOH891

site_idACD
Number of Residues33
DetailsSITE "ACD" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
ChainResidue
DTHR12
DALA13
DGLY14
DPRO15
DTYR16
DARG133
DGLY134
PTYR324
PTHR326
PTRP400
PTYR408
PASP413
PTYR447
PPRO448
PTRP449
PARG450
PARG457
PHIS460
PHIS462
PGLN477
PILE491
PNNO550
PFE600
DHOH605
DHOH606
PHOH662
PHOH665
PHOH672
PHOH673
PHOH781
PHOH782
PHOH783
PHOH784

site_idACE
Number of Residues33
DetailsSITE "ACE" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
ChainResidue
ETHR12
EALA13
EGLY14
EPRO15
ETYR16
EARG133
EGLY134
QTYR324
QTHR326
QTRP400
QTYR408
QASP413
QTYR447
QPRO448
QTRP449
QARG450
QARG457
QHIS460
QHIS462
QGLN477
QILE491
QNNO550
QFE600
QHOH627
EHOH606
QHOH648
QHOH650
QHOH658
QHOH659
QHOH772
QHOH773
QHOH775
QHOH776

site_idACF
Number of Residues33
DetailsSITE "ACF" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
ChainResidue
FTHR12
FALA13
FGLY14
FPRO15
FTYR16
FARG133
FGLY134
RTYR324
RTHR326
RTRP400
RTYR408
RASP413
RTYR447
RPRO448
RTRP449
RARG450
RARG457
RHIS460
RHIS462
RGLN477
RILE491
RNNO550
RFE600
FHOH605
FHOH606
RHOH762
RHOH765
RHOH773
RHOH774
RHOH887
RHOH888
RHOH890
RHOH891

site_idBC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE NNO N 550
ChainResidue
BPRO15
BARG133
NTYR324
NTYR408
NTYR447
NTRP449
NARG457
NHIS460
NHIS462
NILE491
NFE600
NHOH849
NHOH852
NHOH853

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME O 601
ChainResidue
OHIS361
OCYS429
OSER438
OHOH841

site_idBC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE NNO O 550
ChainResidue
CPRO15
OTYR324
OTYR408
OTRP449
OARG457
OHIS460
OHIS462
OFE600
OHOH888
OHOH890
OHOH891

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME P 601
ChainResidue
PHIS361
PCYS429
PLEU430
PSER438
PHOH741

site_idBC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE NNO P 550
ChainResidue
DPRO15
PTYR324
PTYR408
PTYR447
PTRP449
PARG457
PHIS460
PHIS462
PILE491
PFE600
PHOH781
PHOH783
PHOH784

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME Q 601
ChainResidue
QHIS361
QCYS429
QLEU430
QSER438

site_idBC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE NNO Q 550
ChainResidue
EPRO15
QTYR324
QTYR408
QTRP449
QARG457
QHIS460
QHIS462
QILE491
QFE600
QHOH772
QHOH775
QHOH776

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME R 601
ChainResidue
RHIS361
RCYS429
RSER438
RHOH842

site_idBC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE NNO R 550
ChainResidue
FPRO15
RTYR324
RTYR408
RTRP449
RARG457
RHIS460
RHIS462
RILE491
RFE600
RHOH887
RHOH890
RHOH891

site_idVEA
Number of Residues29
DetailsSITE "VEA" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
ChainResidue
ATYR79
AVAL114
AASN115
AASN116
AALA117
AALA118
AMET122
AHIS125
AASN127
AARG142
AVAL157
MASP304
MARG307
MILE339
MPRO340
MGLN341
MSER342
MILE343
MSER344
MGLU345
AHOH620
AHOH623
MHOH640
AHOH632
MHOH646
AHOH635
MHOH662
AHOH646
AHOH667

site_idVEB
Number of Residues29
DetailsSITE "VEB" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
ChainResidue
BTYR79
BVAL114
BASN115
BASN116
BALA117
BALA118
BMET122
BHIS125
BASN127
BARG142
BVAL157
NASP304
NARG307
NILE339
NPRO340
NGLN341
NSER342
NILE343
NSER344
NGLU345
BHOH646
BHOH655
BHOH666
BHOH673
NHOH748
BHOH683
NHOH761
BHOH725
NHOH821

site_idVEC
Number of Residues29
DetailsSITE "VEC" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
ChainResidue
CTYR79
CVAL114
CASN115
CASN116
CALA117
CALA118
CMET122
CHIS125
CASN127
CARG142
CVAL157
OASP304
OARG307
OILE339
OPRO340
OGLN341
OSER342
OILE343
OSER344
OGLU345
CHOH646
OHOH772
CHOH666
CHOH673
OHOH786
CHOH683
OHOH800
CHOH725
OHOH859

site_idVED
Number of Residues29
DetailsSITE "VED" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
ChainResidue
DTYR79
DVAL114
DASN115
DASN116
DALA117
DALA118
DMET122
DHIS125
DASN127
DARG142
DVAL157
PASP304
PARG307
PILE339
PPRO340
PGLN341
PSER342
PILE343
PSER344
PGLU345
DHOH646
DHOH655
DHOH666
DHOH673
PHOH684
DHOH683
PHOH700
DHOH725
DHOH795

site_idVEE
Number of Residues29
DetailsSITE "VEE" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
ChainResidue
ETYR79
EVAL114
EASN115
EASN116
EALA117
EALA118
EMET122
EHIS125
EASN127
EARG142
EVAL157
QASP304
QARG307
QILE339
QPRO340
QGLN341
QSER342
QILE343
QSER344
QGLU345
EHOH646
EHOH655
QHOH663
EHOH673
QHOH670
EHOH683
QHOH683
EHOH725
QHOH744

site_idVEF
Number of Residues29
DetailsSITE "VEF" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
ChainResidue
FTYR79
FVAL114
FASN115
FASN116
FALA117
FALA118
FMET122
FHIS125
FASN127
FARG142
FVAL157
RASP304
RARG307
RILE339
RPRO340
RGLN341
RSER342
RILE343
RSER344
RGLU345
FHOH646
FHOH655
RHOH778
FHOH673
RHOH786
FHOH683
RHOH801
FHOH725
FHOH795

Functional Information from PROSITE/UniProt
site_idPS00083
Number of Residues29
DetailsINTRADIOL_DIOXYGENAS Intradiol ring-cleavage dioxygenases signature. VaGrVvdqyGkpVpntlVEMwqanagGrY
ChainResidueDetails
MVAL380-TYR408
ALEU51-TYR79

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:7990141
ChainResidueDetails
MARG409
OPRO448
OILE461
OPHE463
PARG409
PPRO448
PILE461
PPHE463
QARG409
QPRO448
QILE461
MPRO448
QPHE463
RARG409
RPRO448
RILE461
RPHE463
MILE461
MPHE463
NARG409
NPRO448
NILE461
NPHE463
OARG409

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
MARG409metal ligand
MPRO448metal ligand, proton shuttle (general acid/base)
MPRO458electrostatic stabiliser
MILE461metal ligand
MPHE463metal ligand

site_idMCSA2
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
NARG409metal ligand
NPRO448metal ligand, proton shuttle (general acid/base)
NPRO458electrostatic stabiliser
NILE461metal ligand
NPHE463metal ligand

site_idMCSA3
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
OARG409metal ligand
OPRO448metal ligand, proton shuttle (general acid/base)
OPRO458electrostatic stabiliser
OILE461metal ligand
OPHE463metal ligand

site_idMCSA4
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
PARG409metal ligand
PPRO448metal ligand, proton shuttle (general acid/base)
PPRO458electrostatic stabiliser
PILE461metal ligand
PPHE463metal ligand

site_idMCSA5
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
QARG409metal ligand
QPRO448metal ligand, proton shuttle (general acid/base)
QPRO458electrostatic stabiliser
QILE461metal ligand
QPHE463metal ligand

site_idMCSA6
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
RARG409metal ligand
RPRO448metal ligand, proton shuttle (general acid/base)
RPRO458electrostatic stabiliser
RILE461metal ligand
RPHE463metal ligand

218853

PDB entries from 2024-04-24

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