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3PCF

STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 3-FLURO-4-HYDROXYBENZOATE

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005506molecular_functioniron ion binding
A0008199molecular_functionferric iron binding
A0009056biological_processcatabolic process
A0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
A0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
A0042952biological_processbeta-ketoadipate pathway
A0051213molecular_functiondioxygenase activity
B0003824molecular_functioncatalytic activity
B0005506molecular_functioniron ion binding
B0008199molecular_functionferric iron binding
B0009056biological_processcatabolic process
B0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
B0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
B0042952biological_processbeta-ketoadipate pathway
B0051213molecular_functiondioxygenase activity
C0003824molecular_functioncatalytic activity
C0005506molecular_functioniron ion binding
C0008199molecular_functionferric iron binding
C0009056biological_processcatabolic process
C0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
C0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
C0042952biological_processbeta-ketoadipate pathway
C0051213molecular_functiondioxygenase activity
D0003824molecular_functioncatalytic activity
D0005506molecular_functioniron ion binding
D0008199molecular_functionferric iron binding
D0009056biological_processcatabolic process
D0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
D0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
D0042952biological_processbeta-ketoadipate pathway
D0051213molecular_functiondioxygenase activity
E0003824molecular_functioncatalytic activity
E0005506molecular_functioniron ion binding
E0008199molecular_functionferric iron binding
E0009056biological_processcatabolic process
E0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
E0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
E0042952biological_processbeta-ketoadipate pathway
E0051213molecular_functiondioxygenase activity
F0003824molecular_functioncatalytic activity
F0005506molecular_functioniron ion binding
F0008199molecular_functionferric iron binding
F0009056biological_processcatabolic process
F0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
F0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
F0042952biological_processbeta-ketoadipate pathway
F0051213molecular_functiondioxygenase activity
M0003824molecular_functioncatalytic activity
M0005506molecular_functioniron ion binding
M0008199molecular_functionferric iron binding
M0009056biological_processcatabolic process
M0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
M0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
M0019619biological_process3,4-dihydroxybenzoate catabolic process
M0042952biological_processbeta-ketoadipate pathway
M0046872molecular_functionmetal ion binding
M0051213molecular_functiondioxygenase activity
N0003824molecular_functioncatalytic activity
N0005506molecular_functioniron ion binding
N0008199molecular_functionferric iron binding
N0009056biological_processcatabolic process
N0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
N0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
N0019619biological_process3,4-dihydroxybenzoate catabolic process
N0042952biological_processbeta-ketoadipate pathway
N0046872molecular_functionmetal ion binding
N0051213molecular_functiondioxygenase activity
O0003824molecular_functioncatalytic activity
O0005506molecular_functioniron ion binding
O0008199molecular_functionferric iron binding
O0009056biological_processcatabolic process
O0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
O0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
O0019619biological_process3,4-dihydroxybenzoate catabolic process
O0042952biological_processbeta-ketoadipate pathway
O0046872molecular_functionmetal ion binding
O0051213molecular_functiondioxygenase activity
P0003824molecular_functioncatalytic activity
P0005506molecular_functioniron ion binding
P0008199molecular_functionferric iron binding
P0009056biological_processcatabolic process
P0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
P0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
P0019619biological_process3,4-dihydroxybenzoate catabolic process
P0042952biological_processbeta-ketoadipate pathway
P0046872molecular_functionmetal ion binding
P0051213molecular_functiondioxygenase activity
Q0003824molecular_functioncatalytic activity
Q0005506molecular_functioniron ion binding
Q0008199molecular_functionferric iron binding
Q0009056biological_processcatabolic process
Q0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Q0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
Q0019619biological_process3,4-dihydroxybenzoate catabolic process
Q0042952biological_processbeta-ketoadipate pathway
Q0046872molecular_functionmetal ion binding
Q0051213molecular_functiondioxygenase activity
R0003824molecular_functioncatalytic activity
R0005506molecular_functioniron ion binding
R0008199molecular_functionferric iron binding
R0009056biological_processcatabolic process
R0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
R0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
R0019619biological_process3,4-dihydroxybenzoate catabolic process
R0042952biological_processbeta-ketoadipate pathway
R0046872molecular_functionmetal ion binding
R0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE M 600
ChainResidue
MTYR408
MTYR447
MHIS460
MHIS462
MFHB550
MHOH747

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE N 600
ChainResidue
NTYR408
NTYR447
NHIS460
NHIS462
NFHB550
NHOH861

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE O 600
ChainResidue
OTYR408
OTYR447
OHIS460
OHIS462
OFHB550
OHOH851

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE P 600
ChainResidue
PTYR408
PTYR447
PHIS460
PHIS462
PFHB550
PHOH785

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE Q 600
ChainResidue
QTYR408
QTYR447
QHIS460
QHIS462
QFHB550
QHOH776

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE R 600
ChainResidue
RTYR408
RTYR447
RHIS460
RHIS462
RFHB550
RHOH897

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME M 601
ChainResidue
MHIS361
MCYS429
MLEU430
MSER438
MHOH699

site_idAC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE FHB M 550
ChainResidue
ATHR12
APRO15
AARG133
MTYR324
MTYR408
MTYR447
MTRP449
MARG457
MHIS460
MHIS462
MGLN477
MILE491
MFE600
MHOH744
MHOH747

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FHB M 551
ChainResidue
MARG333
MHOH679
OILE328

site_idACA
Number of Residues30
DetailsSITE "ACA" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
ChainResidue
ATHR12
MTRP400
MTYR408
MTYR447
MPRO448
MTRP449
MARG450
MARG457
MHIS460
MHIS462
MGLN477
AALA13
MILE491
MFHB550
MFE600
AHOH605
AHOH606
MHOH624
MHOH631
MHOH632
MHOH744
AHOH848
AGLY14
MHOH747
APRO15
ATYR16
AARG133
AGLY134
MTYR324
MTHR326

site_idACB
Number of Residues30
DetailsSITE "ACB" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
ChainResidue
BTHR12
BALA13
BGLY14
BPRO15
BTYR16
BARG133
BGLY134
NTYR324
NTHR326
NTRP400
NTYR408
NTYR447
NPRO448
NTRP449
NARG450
NARG457
NHIS460
NHIS462
NGLN477
NILE491
NFHB550
NFE600
NHOH705
BHOH606
NHOH729
NHOH738
NHOH739
NHOH857
NHOH860
NHOH861

site_idACC
Number of Residues30
DetailsSITE "ACC" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
ChainResidue
CTHR12
CALA13
CGLY14
CPRO15
CTYR16
CARG133
CGLY134
OTYR324
OTHR326
OTRP400
OTYR408
OTYR447
OPRO448
OTRP449
OARG450
OARG457
OHIS460
OHIS462
OGLN477
OILE491
OFHB550
OFE600
CHOH605
CHOH606
OHOH643
OHOH659
OHOH660
OHOH843
CHOH848
OHOH851

site_idACD
Number of Residues30
DetailsSITE "ACD" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
ChainResidue
PTRP400
PTYR408
PTYR447
PPRO448
PTRP449
PARG450
PARG457
PHIS460
PHIS462
PGLN477
PILE491
PFHB550
PFE600
DHOH605
DHOH606
PHOH662
PHOH670
PHOH671
PHOH781
PHOH784
PHOH785
DTHR12
DALA13
DGLY14
DPRO15
DTYR16
DARG133
DGLY134
PTYR324
PTHR326

site_idACE
Number of Residues30
DetailsSITE "ACE" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
ChainResidue
ETHR12
EALA13
EGLY14
EPRO15
ETYR16
EARG133
EGLY134
QTYR324
QTHR326
QTRP400
QTYR408
QTYR447
QPRO448
QTRP449
QARG450
QARG457
QHIS460
QHIS462
QGLN477
QILE491
QFHB550
QFE600
QHOH626
EHOH606
QHOH648
QHOH657
QHOH658
QHOH772
QHOH775
QHOH776

site_idACF
Number of Residues30
DetailsSITE "ACF" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
ChainResidue
FTHR12
FALA13
FGLY14
FPRO15
FTYR16
FARG133
FGLY134
RTYR324
RTHR326
RTRP400
RTYR408
RTYR447
RPRO448
RTRP449
RARG450
RARG457
RHIS460
RHIS462
RGLN477
RILE491
RFHB550
RFE600
FHOH605
FHOH606
RHOH764
RHOH773
RHOH774
RHOH893
RHOH896
RHOH897

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME N 601
ChainResidue
NHIS361
NCYS429
NSER438
NHOH809

site_idBC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE FHB N 550
ChainResidue
BTHR12
BPRO15
BARG133
NTYR324
NTYR408
NTYR447
NTRP449
NARG457
NHIS460
NHIS462
NGLN477
NILE491
NFE600
NHOH857
NHOH861

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FHB N 551
ChainResidue
MPRO322
MILE328
NARG333
NHOH788

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME O 601
ChainResidue
OHIS361
OCYS429
OSER438
OHOH766

site_idBC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE FHB O 550
ChainResidue
CTHR12
CPRO15
CARG133
OTYR324
OTYR408
OTYR447
OTRP449
OARG457
OHIS460
OHIS462
OGLN477
OILE491
OFE600
OHOH843
OHOH851

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FHB O 551
ChainResidue
NPRO322
NILE328
NARG333
OARG333
OHOH732

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME P 601
ChainResidue
PHIS361
PCYS429
PLEU430
PSER438
PHOH738

site_idBC8
Number of Residues14
DetailsBINDING SITE FOR RESIDUE FHB P 550
ChainResidue
DTHR12
DPRO15
PTYR324
PTYR408
PTYR447
PTRP449
PARG457
PHIS460
PHIS462
PGLN477
PILE491
PFE600
PHOH781
PHOH785

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FHB P 551
ChainResidue
PARG333
PHOH717
RILE328
RARG333

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME Q 601
ChainResidue
QHIS361
QCYS429
QLEU430
QSER438
QHOH724

site_idCC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE FHB Q 550
ChainResidue
ETHR12
EGLY14
EPRO15
EARG133
QTYR324
QTYR447
QTRP449
QARG457
QHIS460
QHIS462
QGLN477
QILE491
QFE600
QHOH772
QHOH776

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FHB Q 551
ChainResidue
PILE328
QARG333
QHOH703

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME R 601
ChainResidue
RHIS361
RCYS429
RSER438
RHOH844

site_idCC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE FHB R 550
ChainResidue
FTHR12
FPRO15
FARG133
RTYR324
RTYR408
RTYR447
RTRP449
RARG457
RHIS460
RHIS462
RGLN477
RILE491
RFE600
RHOH893
RHOH897

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FHB R 551
ChainResidue
QILE328
RARG333
RHOH823

site_idS2M
Number of Residues36
DetailsSECONDARY THREE-FOLD SITE BETWEEN M, N, O CHAINS.
ChainResidue
MLYS318
MLEU320
MPRO322
MILE328
MPRO332
MARG333
MGLN334
MFHB551
MHOH679
MHOH696
MHOH709
MHOH742
NLYS318
NLEU320
NPRO322
NILE328
NPRO332
NARG333
NGLN334
NFHB551
NHOH788
NHOH805
NHOH820
NHOH856
OLYS318
OLEU320
OPRO322
OILE328
OPRO332
OARG333
OGLN334
OFHB551
OHOH732
OHOH759
OHOH782
OHOH840

site_idS2P
Number of Residues36
DetailsSECONDARY THREE-FOLD SITE BETWEEN P, Q, R CHAINS.
ChainResidue
PLYS318
PLEU320
PPRO322
PILE328
PPRO332
PARG333
PGLN334
PFHB551
PHOH717
PHOH735
PHOH748
PHOH780
QLYS318
QLEU320
QPRO322
QILE328
QPRO332
QARG333
QGLN334
QFHB551
QHOH703
QHOH720
QHOH734
QHOH771
RLYS318
RLEU320
RPRO322
RILE328
RPRO332
RARG333
RGLN334
RFHB551
RHOH823
RHOH841
RHOH854
RHOH892

site_idVEA
Number of Residues29
DetailsSITE "VEA" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
ChainResidue
ATYR79
AVAL114
AASN115
AASN116
AALA117
AALA118
AMET122
AHIS125
AASN127
AARG142
AVAL157
MASP304
MARG307
MILE339
MPRO340
MGLN341
MSER342
MILE343
MSER344
MGLU345
AHOH646
AHOH655
MHOH636
AHOH673
MHOH642
AHOH683
MHOH659
AHOH725
AHOH795

site_idVEB
Number of Residues29
DetailsSITE "VEB" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
ChainResidue
BTYR79
BVAL114
BASN115
BASN116
BALA117
BALA118
BMET122
BHIS125
BASN127
BARG142
BVAL157
NASP304
NARG307
NILE339
NPRO340
NGLN341
NSER342
NILE343
NSER344
NGLU345
BHOH646
NHOH736
NHOH743
BHOH673
NHOH751
BHOH683
NHOH767
BHOH725
BHOH795

site_idVEC
Number of Residues29
DetailsSITE "VEC" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
ChainResidue
CTYR79
CVAL114
CASN115
CASN116
CALA117
CALA118
CMET122
CHIS125
CASN127
CARG142
CVAL157
OASP304
OARG307
OILE339
OPRO340
OGLN341
OSER342
OILE343
OSER344
OGLU345
CHOH646
OHOH655
OHOH666
CHOH673
OHOH681
CHOH683
OHOH707
CHOH725
OHOH795

site_idVED
Number of Residues29
DetailsSITE "VED" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
ChainResidue
DTYR79
DVAL114
DASN115
DASN116
DALA117
DALA118
DMET122
DHIS125
DASN127
DARG142
DVAL157
PASP304
PARG307
PILE339
PPRO340
PGLN341
PSER342
PILE343
PSER344
PGLU345
DHOH646
PHOH668
DHOH666
DHOH673
PHOH681
DHOH683
PHOH698
DHOH725
PHOH756

site_idVEE
Number of Residues29
DetailsSITE "VEE" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
ChainResidue
ETYR79
EVAL114
EASN115
EASN116
EALA117
EALA118
EMET122
EHIS125
EASN127
EARG142
EVAL157
QASP304
QARG307
QILE339
QPRO340
QGLN341
QSER342
QILE343
QSER344
QGLU345
EHOH646
QHOH655
QHOH662
EHOH673
QHOH669
EHOH683
QHOH683
EHOH725
QHOH742

site_idVEF
Number of Residues29
DetailsSITE "VEF" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
ChainResidue
FTYR79
FVAL114
FASN115
FASN116
FALA117
FALA118
FMET122
FHIS125
FASN127
FARG142
FVAL157
RASP304
RARG307
RILE339
RPRO340
RGLN341
RSER342
RILE343
RSER344
RGLU345
FHOH646
RHOH771
RHOH779
FHOH673
RHOH786
FHOH683
RHOH802
FHOH725
FHOH795

Functional Information from PROSITE/UniProt
site_idPS00083
Number of Residues29
DetailsINTRADIOL_DIOXYGENAS Intradiol ring-cleavage dioxygenases signature. VaGrVvdqyGkpVpntlVEMwqanagGrY
ChainResidueDetails
MVAL380-TYR408
ALEU51-TYR79

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:7990141
ChainResidueDetails
MARG409
OPRO448
OILE461
OPHE463
PARG409
PPRO448
PILE461
PPHE463
QARG409
QPRO448
QILE461
MPRO448
QPHE463
RARG409
RPRO448
RILE461
RPHE463
MILE461
MPHE463
NARG409
NPRO448
NILE461
NPHE463
OARG409

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
MTYR447
MARG457

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
NTYR447
NARG457

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
OTYR447
OARG457

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
PTYR447
PARG457

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
QTYR447
QARG457

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 3pca
ChainResidueDetails
RTYR447
RARG457

site_idMCSA1
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
MARG409metal ligand
MPRO448metal ligand, proton shuttle (general acid/base)
MPRO458electrostatic stabiliser
MILE461metal ligand
MPHE463metal ligand

site_idMCSA2
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
NARG409metal ligand
NPRO448metal ligand, proton shuttle (general acid/base)
NPRO458electrostatic stabiliser
NILE461metal ligand
NPHE463metal ligand

site_idMCSA3
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
OARG409metal ligand
OPRO448metal ligand, proton shuttle (general acid/base)
OPRO458electrostatic stabiliser
OILE461metal ligand
OPHE463metal ligand

site_idMCSA4
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
PARG409metal ligand
PPRO448metal ligand, proton shuttle (general acid/base)
PPRO458electrostatic stabiliser
PILE461metal ligand
PPHE463metal ligand

site_idMCSA5
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
QARG409metal ligand
QPRO448metal ligand, proton shuttle (general acid/base)
QPRO458electrostatic stabiliser
QILE461metal ligand
QPHE463metal ligand

site_idMCSA6
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
RARG409metal ligand
RPRO448metal ligand, proton shuttle (general acid/base)
RPRO458electrostatic stabiliser
RILE461metal ligand
RPHE463metal ligand

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PDB entries from 2024-07-10

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