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3P24

Structure of profragilysin-3 from Bacteroides fragilis

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
B0006508biological_processproteolysis
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
C0006508biological_processproteolysis
C0008237molecular_functionmetallopeptidase activity
C0008270molecular_functionzinc ion binding
D0006508biological_processproteolysis
D0008237molecular_functionmetallopeptidase activity
D0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PG4 A 502
ChainResidue
ATYR265
ATHR266
AASN290
ALYS292
AALA293
ATYR296
ATYR301
AHOH813
AHOH1479

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 503
ChainResidue
AGLU227
AASN228
AGLY229
ASER230
AARG305
AHOH653
AHOH657
CARG116
CASN117

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 504
ChainResidue
ATYR221
ATYR296
BGLN51

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 505
ChainResidue
ATYR115
ATHR371
AGLY372
ATYR373
AHOH613

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE AZI A 510
ChainResidue
ATRP318
AHOH694
AHOH959

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE AZI A 511
ChainResidue
AHIS358
ASER378
AHOH710
AHOH839

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 999
ChainResidue
AASP194
AHIS348
AHIS352
AHIS358

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 506
ChainResidue
BARG116
BASN117
BHOH869
BHOH1039
DGLU227
DASN228
DSER230
DARG305

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE AZI B 509
ChainResidue
BMET77
BASP78
BLEU92
BPHE93
BHOH548

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 999
ChainResidue
BASP194
BHIS348
BHIS352
BHIS358

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 999
ChainResidue
CTYR191
CASP194
CHIS348
CHIS352
CHIS358

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PG4 D 501
ChainResidue
DTYR265
DTHR266
DLYS292
DALA293
DTYR296
DTYR301
DHOH1140
DHOH1141

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL D 507
ChainResidue
DASP86
DHOH1427

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL D 508
ChainResidue
CTHR50
CGLN51
DTYR221
DHOH1142
DHOH1640

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 999
ChainResidue
DASP194
DHIS348
DHIS352
DHIS358

Functional Information from PROSITE/UniProt
site_idPS00142
Number of Residues10
DetailsZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. VMAHELGHIL
ChainResidueDetails
AVAL345-LEU354

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PDB entries from 2026-01-28

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