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3ONF

Crystal structure of Lupinus luteus S-adenosyl-L-homocysteine hydrolase in complex with cordycepin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004013molecular_functionadenosylhomocysteinase activity
A0005829cellular_componentcytosol
A0006730biological_processone-carbon metabolic process
A0016787molecular_functionhydrolase activity
A0033353biological_processS-adenosylmethionine cycle
B0004013molecular_functionadenosylhomocysteinase activity
B0005829cellular_componentcytosol
B0006730biological_processone-carbon metabolic process
B0016787molecular_functionhydrolase activity
B0033353biological_processS-adenosylmethionine cycle
Functional Information from PDB Data
site_idAC1
Number of Residues35
DetailsBINDING SITE FOR RESIDUE NAD A 501
ChainResidue
ATHR206
AGLU292
AILE293
AASP294
ACYS297
ATHR324
ATHR325
AGLY326
AASN327
AILE330
AILE348
ATHR207
AGLY349
AHIS350
AASN397
AHIS404
AHOH502
A3AD504
AHOH517
AHOH521
AHOH555
AHOH655
ATHR208
AHOH716
AHOH722
BGLN466
BLYS479
BTYR483
BHOH690
AASN240
AGLY269
AGLY271
AASP272
AVAL273
ATHR291

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE 3AD A 504
ChainResidue
ALEU61
AHIS62
ATHR64
AGLN66
ATHR67
AASP139
AGLU205
ALYS235
AASP239
ALEU395
ATHR402
AHIS404
AMET409
ANAD501
AHOH804

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 507
ChainResidue
AGLN66
ATHR402
AGLY403
AHIS404
AHOH554
AHOH783

site_idAC4
Number of Residues34
DetailsBINDING SITE FOR RESIDUE NAD B 502
ChainResidue
ALYS479
ATYR483
AHOH654
BTHR206
BTHR207
BTHR208
BASN240
BGLY269
BGLY271
BASP272
BVAL273
BTHR291
BGLU292
BILE293
BASP294
BCYS297
BTHR324
BTHR325
BGLY326
BASN327
BILE330
BILE348
BGLY349
BHIS350
BASN397
BHIS404
BHOH491
B3AD505
BHOH508
BHOH523
BHOH640
BHOH645
BHOH704
BHOH771

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE TRS B 503
ChainResidue
AHOH602
BVAL474
BGLU475
BTYR478
BHOH581
BHOH665
BHOH779

site_idAC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE 3AD B 505
ChainResidue
BGLN66
BTHR67
BASP139
BGLU205
BLYS235
BASP239
BLEU395
BTHR402
BHIS404
BMET409
BPHE413
BNAD502
BHOH707
BHIS62
BTHR64

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA B 506
ChainResidue
BGLN66
BTHR402
BGLY403
BHIS404
BHOH489
BHOH605

Functional Information from PROSITE/UniProt
site_idPS00738
Number of Residues15
DetailsADOHCYASE_1 S-adenosyl-L-homocysteine hydrolase signature 1. SCNiFSTQDhAAAAI
ChainResidueDetails
ASER85-ILE99

site_idPS00739
Number of Residues18
DetailsADOHCYASE_2 S-adenosyl-L-homocysteine hydrolase signature 2. GKvavVaGYGdVGKGcaA
ChainResidueDetails
AGLY262-ALA279

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues36
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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