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3OND

Crystal structure of Lupinus luteus S-adenosyl-L-homocysteine hydrolase in complex with adenosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0004013molecular_functionadenosylhomocysteinase activity
A0005829cellular_componentcytosol
A0006730biological_processone-carbon metabolic process
A0016787molecular_functionhydrolase activity
A0033353biological_processS-adenosylmethionine cycle
B0004013molecular_functionadenosylhomocysteinase activity
B0005829cellular_componentcytosol
B0006730biological_processone-carbon metabolic process
B0016787molecular_functionhydrolase activity
B0033353biological_processS-adenosylmethionine cycle
Functional Information from PDB Data
site_idAC1
Number of Residues34
DetailsBINDING SITE FOR RESIDUE NAD A 501
ChainResidue
ATHR206
AGLU292
AILE293
AASP294
ACYS297
ATHR324
ATHR325
AGLY326
AASN327
AILE330
AILE348
ATHR207
AGLY349
AHIS350
AASN397
AHIS404
AADN506
AHOH556
AHOH563
AHOH627
AHOH639
AHOH662
ATHR208
AHOH679
AHOH713
BGLN466
BLYS479
BTYR483
AASN240
AGLY269
AGLY271
AASP272
AVAL273
ATHR291

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE TRS A 505
ChainResidue
ATHR460
AVAL474
AGLU475
ATYR478
AHOH540
AHOH588
AHOH1355
BHOH644

site_idAC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ADN A 506
ChainResidue
AHIS62
ATHR64
AGLN66
ATHR67
AASP139
AGLU205
ATHR206
ALYS235
AASP239
ATHR402
AHIS404
AMET409
APHE413
ANAD501
AHOH859
AHOH963

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 509
ChainResidue
ATHR402
AGLY403
AHIS404
AHOH607
AHOH765

site_idAC5
Number of Residues34
DetailsBINDING SITE FOR RESIDUE NAD B 502
ChainResidue
AGLN466
ALYS479
ATYR483
BTHR206
BTHR207
BTHR208
BASN240
BGLY269
BGLY271
BASP272
BVAL273
BTHR291
BGLU292
BILE293
BASP294
BCYS297
BTHR324
BTHR325
BGLY326
BASN327
BILE330
BILE348
BGLY349
BHIS350
BASN397
BHIS404
BHOH498
BHOH499
BHOH501
BADN507
BHOH525
BHOH587
BHOH761
BHOH785

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE TRS B 503
ChainResidue
BVAL474
BGLU475
BTYR478
BHOH574
BHOH631
BHOH884
BHOH1262
AHOH595
BTHR460

site_idAC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE TRS B 504
ChainResidue
BGLU361
BVAL366
BLYS367
BARG368
BTRP378
BHOH751
BHOH1241
BHOH1242
BHOH1243
BHOH1254
BHOH1255

site_idAC8
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ADN B 507
ChainResidue
BHIS62
BTHR64
BGLN66
BTHR67
BASP139
BGLU205
BTHR206
BLYS235
BASP239
BLEU395
BTHR402
BHIS404
BMET409
BPHE413
BNAD502
BHOH592
BHOH694

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 508
ChainResidue
BTHR402
BGLY403
BHIS404
BHOH603
BHOH865

Functional Information from PROSITE/UniProt
site_idPS00738
Number of Residues15
DetailsADOHCYASE_1 S-adenosyl-L-homocysteine hydrolase signature 1. SCNiFSTQDhAAAAI
ChainResidueDetails
ASER85-ILE99

site_idPS00739
Number of Residues18
DetailsADOHCYASE_2 S-adenosyl-L-homocysteine hydrolase signature 2. GKvavVaGYGdVGKGcaA
ChainResidueDetails
AGLY262-ALA279

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ATHR64
AASN327
AILE348
AASN397
BTHR64
BASP139
BGLU205
BTHR206
BLYS235
BASP239
BASN240
AASP139
BGLY269
BGLU292
BASN327
BILE348
BASN397
AGLU205
ATHR206
ALYS235
AASP239
AASN240
AGLY269
AGLU292

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PDB entries from 2024-10-30

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