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3OKR

Structure of Mtb apo 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase (IspD)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0002135molecular_functionCTP binding
A0003824molecular_functioncatalytic activity
A0005515molecular_functionprotein binding
A0005886cellular_componentplasma membrane
A0008270molecular_functionzinc ion binding
A0008299biological_processisoprenoid biosynthetic process
A0016779molecular_functionnucleotidyltransferase activity
A0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
A0030145molecular_functionmanganese ion binding
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0051484biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
A0070567molecular_functioncytidylyltransferase activity
B0000287molecular_functionmagnesium ion binding
B0002135molecular_functionCTP binding
B0003824molecular_functioncatalytic activity
B0005515molecular_functionprotein binding
B0005886cellular_componentplasma membrane
B0008270molecular_functionzinc ion binding
B0008299biological_processisoprenoid biosynthetic process
B0016779molecular_functionnucleotidyltransferase activity
B0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
B0030145molecular_functionmanganese ion binding
B0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
B0051484biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
B0070567molecular_functioncytidylyltransferase activity
C0000287molecular_functionmagnesium ion binding
C0002135molecular_functionCTP binding
C0003824molecular_functioncatalytic activity
C0005515molecular_functionprotein binding
C0005886cellular_componentplasma membrane
C0008270molecular_functionzinc ion binding
C0008299biological_processisoprenoid biosynthetic process
C0016779molecular_functionnucleotidyltransferase activity
C0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
C0030145molecular_functionmanganese ion binding
C0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
C0051484biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
C0070567molecular_functioncytidylyltransferase activity
D0000287molecular_functionmagnesium ion binding
D0002135molecular_functionCTP binding
D0003824molecular_functioncatalytic activity
D0005515molecular_functionprotein binding
D0005886cellular_componentplasma membrane
D0008270molecular_functionzinc ion binding
D0008299biological_processisoprenoid biosynthetic process
D0016779molecular_functionnucleotidyltransferase activity
D0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
D0030145molecular_functionmanganese ion binding
D0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
D0051484biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
D0070567molecular_functioncytidylyltransferase activity
Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VLVHDAAR
ChainResidueDetails
AVAL103-ARG110

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsSITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_00108
ChainResidueDetails
AARG20
ALYS27
BARG20
BLYS27
CARG20
CLYS27
DARG20
DLYS27

site_idSWS_FT_FI2
Number of Residues8
DetailsSITE: Positions MEP for the nucleophilic attack => ECO:0000255|HAMAP-Rule:MF_00108
ChainResidueDetails
AARG157
ALYS215
BARG157
BLYS215
CARG157
CLYS215
DARG157
DLYS215

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PDB entries from 2024-10-09

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