3OFK
Crystal structure of N-methyltransferase NodS from Bradyrhizobium japonicum WM9 in complex with S-adenosyl-l-homocysteine (SAH)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0008168 | molecular_function | methyltransferase activity |
| A | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
| A | 0009312 | biological_process | oligosaccharide biosynthetic process |
| A | 0009877 | biological_process | nodulation |
| A | 0032259 | biological_process | methylation |
| B | 0008168 | molecular_function | methyltransferase activity |
| B | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
| B | 0009312 | biological_process | oligosaccharide biosynthetic process |
| B | 0009877 | biological_process | nodulation |
| B | 0032259 | biological_process | methylation |
| C | 0008168 | molecular_function | methyltransferase activity |
| C | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
| C | 0009312 | biological_process | oligosaccharide biosynthetic process |
| C | 0009877 | biological_process | nodulation |
| C | 0032259 | biological_process | methylation |
| D | 0008168 | molecular_function | methyltransferase activity |
| D | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
| D | 0009312 | biological_process | oligosaccharide biosynthetic process |
| D | 0009877 | biological_process | nodulation |
| D | 0032259 | biological_process | methylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE SAH A 217 |
| Chain | Residue |
| A | LEU10 |
| A | MET75 |
| A | ASP98 |
| A | ILE99 |
| A | ALA114 |
| A | GLU115 |
| A | VAL116 |
| A | TYR119 |
| A | HOH215 |
| A | HOH216 |
| A | HOH235 |
| A | LEU22 |
| A | HOH268 |
| A | ARG31 |
| A | HIS32 |
| A | GLY52 |
| A | CYS53 |
| A | ALA54 |
| A | ASP73 |
| A | VAL74 |
| site_id | AC2 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE SAH B 217 |
| Chain | Residue |
| B | LEU10 |
| B | LEU22 |
| B | ARG31 |
| B | HIS32 |
| B | GLY52 |
| B | ALA54 |
| B | ASP73 |
| B | VAL74 |
| B | MET75 |
| B | ASP98 |
| B | ILE99 |
| B | ALA114 |
| B | GLU115 |
| B | VAL116 |
| B | LEU120 |
| B | HOH210 |
| B | HOH212 |
| B | HOH219 |
| B | HOH220 |
| site_id | AC3 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE SAH C 217 |
| Chain | Residue |
| C | TRP20 |
| C | LEU22 |
| C | ARG31 |
| C | HIS32 |
| C | GLY52 |
| C | ALA54 |
| C | ASP73 |
| C | VAL74 |
| C | MET75 |
| C | ASP98 |
| C | ILE99 |
| C | ALA114 |
| C | GLU115 |
| C | VAL116 |
| C | TYR119 |
| C | LEU120 |
| C | HOH212 |
| C | HOH214 |
| C | HOH229 |
| C | HOH278 |
| site_id | AC4 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE SAH D 217 |
| Chain | Residue |
| C | ARG200 |
| D | ARG31 |
| D | HIS32 |
| D | GLY52 |
| D | ALA54 |
| D | ASP73 |
| D | VAL74 |
| D | MET75 |
| D | THR97 |
| D | ASP98 |
| D | ILE99 |
| D | ALA114 |
| D | GLU115 |
| D | VAL116 |
| D | HOH211 |
| D | HOH223 |
| D | HOH230 |
| D | HOH298 |
| D | HOH770 |
