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3O98

Glutathionylspermidine synthetase/amidase C59A complex with ADP and Gsp

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003824molecular_functioncatalytic activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0006749biological_processglutathione metabolic process
A0008216biological_processspermidine metabolic process
A0008884molecular_functionglutathionylspermidine amidase activity
A0008885molecular_functionglutathionylspermidine synthase activity
A0016787molecular_functionhydrolase activity
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0003824molecular_functioncatalytic activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005829cellular_componentcytosol
B0006749biological_processglutathione metabolic process
B0008216biological_processspermidine metabolic process
B0008884molecular_functionglutathionylspermidine amidase activity
B0008885molecular_functionglutathionylspermidine synthase activity
B0016787molecular_functionhydrolase activity
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE TS5 A 620
ChainResidue
AGLY54
AALA81
ATHR129
AGLY130
AHIS131
AASN149
AGLN58
AALA59
AVAL60
AARG64
AASP77
AVAL78
AGLY79
AMET80

site_idAC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE ADP A 3001
ChainResidue
AASP318
ATYR329
AGLU330
ALYS498
AALA531
ALYS533
AARG538
ACYS539
AGLY540
AGLN568
AGLN569
ALEU570
ATRP571
ACYS572
ALEU573
AGLN582
ALEU603
AILE605
AMG4000
AHOH4001
AHOH4002
AMG5000
AHOH5001
AHOH5002

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 4000
ChainResidue
AGLU330
AASN332
AADP3001
AHOH4001
AHOH4002
AMG5000
AHOH5001

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 5000
ChainResidue
AASP318
AGLU330
AADP3001
AMG4000
AHOH5001
AHOH5002

site_idAC5
Number of Residues24
DetailsBINDING SITE FOR RESIDUE ADP B 3002
ChainResidue
BASP318
BTYR329
BGLU330
BLYS498
BLYS533
BARG538
BCYS539
BGLY540
BGLN568
BGLN569
BLEU570
BTRP571
BCYS572
BLEU573
BGLN582
BLEU603
BVAL604
BILE605
BMG6000
BHOH6001
BHOH6002
BMG7000
BHOH7001
BHOH7002

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 6000
ChainResidue
BGLU330
BASN332
BADP3002
BHOH6001
BHOH6002
BMG7000
BHOH7001

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 7000
ChainResidue
BASP318
BGLU330
BADP3002
BMG6000
BHOH7001
BHOH7002

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsRegion: {"description":"Linker"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"S-(gamma-glutamyl-cysteinyl-glycyl)-cysteine intermediate","evidences":[{"source":"PubMed","id":"9398217","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues52
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsSite: {"description":"Increases nucleophilicity of active site Cys; for amidase activity"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsSite: {"description":"Transition state stabilizer; for synthetase activity"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"Cysteine sulfenic acid (-SOH); transient","evidences":[{"source":"PubMed","id":"20530482","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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