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3O98

Glutathionylspermidine synthetase/amidase C59A complex with ADP and Gsp

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0006749biological_processglutathione metabolic process
A0008216biological_processspermidine metabolic process
A0008884molecular_functionglutathionylspermidine amidase activity
A0008885molecular_functionglutathionylspermidine synthase activity
A0016787molecular_functionhydrolase activity
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005829cellular_componentcytosol
B0006749biological_processglutathione metabolic process
B0008216biological_processspermidine metabolic process
B0008884molecular_functionglutathionylspermidine amidase activity
B0008885molecular_functionglutathionylspermidine synthase activity
B0016787molecular_functionhydrolase activity
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE TS5 A 620
ChainResidue
AGLY54
AALA81
ATHR129
AGLY130
AHIS131
AASN149
AGLN58
AALA59
AVAL60
AARG64
AASP77
AVAL78
AGLY79
AMET80

site_idAC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE ADP A 3001
ChainResidue
AASP318
ATYR329
AGLU330
ALYS498
AALA531
ALYS533
AARG538
ACYS539
AGLY540
AGLN568
AGLN569
ALEU570
ATRP571
ACYS572
ALEU573
AGLN582
ALEU603
AILE605
AMG4000
AHOH4001
AHOH4002
AMG5000
AHOH5001
AHOH5002

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 4000
ChainResidue
AGLU330
AASN332
AADP3001
AHOH4001
AHOH4002
AMG5000
AHOH5001

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 5000
ChainResidue
AASP318
AGLU330
AADP3001
AMG4000
AHOH5001
AHOH5002

site_idAC5
Number of Residues24
DetailsBINDING SITE FOR RESIDUE ADP B 3002
ChainResidue
BASP318
BTYR329
BGLU330
BLYS498
BLYS533
BARG538
BCYS539
BGLY540
BGLN568
BGLN569
BLEU570
BTRP571
BCYS572
BLEU573
BGLN582
BLEU603
BVAL604
BILE605
BMG6000
BHOH6001
BHOH6002
BMG7000
BHOH7001
BHOH7002

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 6000
ChainResidue
BGLU330
BASN332
BADP3002
BHOH6001
BHOH6002
BMG7000
BHOH7001

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 7000
ChainResidue
BASP318
BGLU330
BADP3002
BMG6000
BHOH7001
BHOH7002

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: S-(gamma-glutamyl-cysteinyl-glycyl)-cysteine intermediate => ECO:0000269|PubMed:9398217
ChainResidueDetails
AALA59
BALA59

site_idSWS_FT_FI2
Number of Residues38
DetailsBINDING:
ChainResidueDetails
AGLN58
AGLU391
AGLU392
ATHR446
ALYS498
ALYS533
ACYS539
AGLN568
AGLN582
ALEU603
AASP610
AARG64
BGLN58
BARG64
BVAL78
BASN149
BARG316
BASP318
BGLU330
BASN332
BSER335
BGLU391
AVAL78
BGLU392
BTHR446
BLYS498
BLYS533
BCYS539
BGLN568
BGLN582
BLEU603
BASP610
AASN149
AARG316
AASP318
AGLU330
AASN332
ASER335

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Increases nucleophilicity of active site Cys; for amidase activity
ChainResidueDetails
AHIS131
BHIS131

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Transition state stabilizer; for synthetase activity
ChainResidueDetails
AARG316
BARG316

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Cysteine sulfenic acid (-SOH); transient => ECO:0000269|PubMed:20530482
ChainResidueDetails
AALA59
BALA59

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PDB entries from 2024-05-01

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