3O1Y
Electron transfer complexes: Experimental mapping of the redox-dependent cytochrome c electrostatic surface
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005758 | cellular_component | mitochondrial intermembrane space |
| A | 0005829 | cellular_component | cytosol |
| A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| A | 0006915 | biological_process | apoptotic process |
| A | 0008289 | molecular_function | lipid binding |
| A | 0009055 | molecular_function | electron transfer activity |
| A | 0018063 | biological_process | cytochrome c-heme linkage |
| A | 0020037 | molecular_function | heme binding |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0043065 | biological_process | positive regulation of apoptotic process |
| A | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0070069 | cellular_component | cytochrome complex |
| A | 0070469 | cellular_component | respirasome |
| A | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005758 | cellular_component | mitochondrial intermembrane space |
| B | 0005829 | cellular_component | cytosol |
| B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| B | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| B | 0006915 | biological_process | apoptotic process |
| B | 0008289 | molecular_function | lipid binding |
| B | 0009055 | molecular_function | electron transfer activity |
| B | 0018063 | biological_process | cytochrome c-heme linkage |
| B | 0020037 | molecular_function | heme binding |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0043065 | biological_process | positive regulation of apoptotic process |
| B | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0070069 | cellular_component | cytochrome complex |
| B | 0070469 | cellular_component | respirasome |
| B | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005739 | cellular_component | mitochondrion |
| C | 0005758 | cellular_component | mitochondrial intermembrane space |
| C | 0005829 | cellular_component | cytosol |
| C | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| C | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| C | 0006915 | biological_process | apoptotic process |
| C | 0008289 | molecular_function | lipid binding |
| C | 0009055 | molecular_function | electron transfer activity |
| C | 0018063 | biological_process | cytochrome c-heme linkage |
| C | 0020037 | molecular_function | heme binding |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0043065 | biological_process | positive regulation of apoptotic process |
| C | 0043280 | biological_process | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0070069 | cellular_component | cytochrome complex |
| C | 0070469 | cellular_component | respirasome |
| C | 2001056 | biological_process | positive regulation of cysteine-type endopeptidase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE HEC A 105 |
| Chain | Residue |
| A | LYS13 |
| A | GLY41 |
| A | TYR48 |
| A | THR49 |
| A | ASN52 |
| A | TRP59 |
| A | TYR67 |
| A | THR78 |
| A | LYS79 |
| A | MET80 |
| A | ILE81 |
| A | CYS14 |
| A | PHE82 |
| A | HOH125 |
| A | HOH133 |
| B | HOH135 |
| A | GLN16 |
| A | CYS17 |
| A | HIS18 |
| A | THR28 |
| A | GLY29 |
| A | PRO30 |
| A | THR40 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NO3 A 106 |
| Chain | Residue |
| A | GLU4 |
| A | LYS7 |
| C | LYS72 |
| C | ALA83 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NO3 A 107 |
| Chain | Residue |
| A | LYS8 |
| C | LYS13 |
| C | GLY84 |
| C | ILE85 |
| C | LYS86 |
| C | HOH138 |
| C | HOH207 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NO3 A 108 |
| Chain | Residue |
| A | LYS8 |
| A | VAL11 |
| A | GLN12 |
| C | PHE82 |
| C | ALA83 |
| C | GLY84 |
| C | HOH207 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NO3 A 109 |
| Chain | Residue |
| A | LYS13 |
| A | HOH276 |
| A | HOH413 |
| B | GLN12 |
| B | NO3107 |
| site_id | AC6 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE NO3 A 110 |
| Chain | Residue |
| A | THR19 |
| A | VAL20 |
| A | GLU21 |
| A | HOH148 |
| A | HOH164 |
| A | HOH301 |
| A | HOH515 |
| C | THR28 |
| C | ILE81 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE NO3 A 111 |
| Chain | Residue |
| A | PHE36 |
| A | PHE36 |
| A | LYS99 |
| A | LYS99 |
| A | ASN103 |
| A | ASN103 |
| A | HOH156 |
| A | HOH156 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NO3 A 112 |
| Chain | Residue |
| A | PHE82 |
| A | ALA83 |
| A | GLY84 |
| A | HOH138 |
| B | LYS8 |
| B | VAL11 |
| B | GLN12 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NO3 A 113 |
| Chain | Residue |
| A | GLU4 |
| A | LYS5 |
| A | LYS8 |
| A | HOH356 |
| A | HOH463 |
| A | HOH482 |
| site_id | BC1 |
| Number of Residues | 22 |
| Details | BINDING SITE FOR RESIDUE HEC B 105 |
| Chain | Residue |
| B | LYS13 |
| B | CYS14 |
| B | CYS17 |
| B | HIS18 |
| B | THR28 |
| B | GLY29 |
| B | PRO30 |
| B | THR40 |
| B | GLY41 |
| B | TYR48 |
| B | THR49 |
| B | ASN52 |
| B | TRP59 |
| B | TYR67 |
| B | THR78 |
| B | LYS79 |
| B | MET80 |
| B | ILE81 |
| B | PHE82 |
| B | LEU94 |
| B | HOH152 |
| B | HOH160 |
| site_id | BC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NO3 B 106 |
| Chain | Residue |
| A | ALA83 |
| B | GLU4 |
| B | LYS7 |
| B | HOH411 |
| A | LYS72 |
| site_id | BC3 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE NO3 B 107 |
| Chain | Residue |
| A | LYS13 |
| A | GLY84 |
| A | ILE85 |
| A | LYS86 |
| A | NO3109 |
| A | HOH138 |
| B | LYS8 |
| B | HOH131 |
| B | HOH277 |
| site_id | BC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE NO3 B 108 |
| Chain | Residue |
| B | LYS13 |
| B | GLY84 |
| B | ILE85 |
| B | LYS86 |
| B | HOH141 |
| B | HOH326 |
| B | HOH490 |
| C | LYS8 |
| site_id | BC5 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE NO3 B 109 |
| Chain | Residue |
| A | THR28 |
| A | ILE81 |
| B | PHE10 |
| B | THR19 |
| B | VAL20 |
| B | GLU21 |
| B | HOH127 |
| B | HOH135 |
| B | HOH245 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NO3 B 110 |
| Chain | Residue |
| B | GLU4 |
| B | LYS5 |
| B | LYS8 |
| B | HOH362 |
| B | HOH373 |
| site_id | BC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NO3 B 111 |
| Chain | Residue |
| B | GLY45 |
| B | PHE46 |
| B | THR47 |
| B | HOH123 |
| B | HOH140 |
| B | HOH169 |
| B | HOH511 |
| site_id | BC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NO3 B 112 |
| Chain | Residue |
| B | PHE82 |
| B | ALA83 |
| B | GLY84 |
| B | HOH203 |
| B | HOH518 |
| C | LYS8 |
| C | VAL11 |
| site_id | BC9 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE NO3 B 113 |
| Chain | Residue |
| B | PHE36 |
| B | GLY37 |
| B | HOH210 |
| B | HOH352 |
| C | PHE36 |
| C | LYS60 |
| C | GLU61 |
| C | LYS99 |
| C | HOH273 |
| C | HOH408 |
| site_id | CC1 |
| Number of Residues | 25 |
| Details | BINDING SITE FOR RESIDUE HEC C 105 |
| Chain | Residue |
| A | VAL11 |
| A | HOH515 |
| C | LYS13 |
| C | CYS14 |
| C | GLN16 |
| C | CYS17 |
| C | HIS18 |
| C | THR28 |
| C | GLY29 |
| C | PRO30 |
| C | THR40 |
| C | GLY41 |
| C | TYR48 |
| C | THR49 |
| C | ASN52 |
| C | TRP59 |
| C | TYR67 |
| C | THR78 |
| C | LYS79 |
| C | MET80 |
| C | ILE81 |
| C | PHE82 |
| C | LEU94 |
| C | HOH145 |
| C | HOH155 |
| site_id | CC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NO3 C 106 |
| Chain | Residue |
| B | LYS72 |
| B | ALA83 |
| B | HOH146 |
| C | GLU4 |
| C | LYS7 |
| C | HOH521 |
| site_id | CC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE NO3 C 107 |
| Chain | Residue |
| A | GLN12 |
| C | GLN12 |
| C | LYS13 |
| site_id | CC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE NO3 C 108 |
| Chain | Residue |
| B | THR28 |
| B | ILE81 |
| B | HOH155 |
| B | HOH289 |
| C | PHE10 |
| C | THR19 |
| C | VAL20 |
| C | GLU21 |
| site_id | CC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NO3 C 109 |
| Chain | Residue |
| B | PHE36 |
| B | LYS99 |
| B | ASN103 |
| B | HOH352 |
| C | PHE36 |
| C | LYS99 |
| C | ASN103 |
| site_id | CC6 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE NO3 C 110 |
| Chain | Residue |
| B | PHE36 |
| B | LYS60 |
| B | GLU61 |
| B | GLU62 |
| B | LYS99 |
| B | HOH398 |
| C | PHE36 |
| C | GLY37 |
| C | HOH132 |
| C | HOH164 |
| site_id | CC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NO3 C 111 |
| Chain | Residue |
| B | MET65 |
| B | GLU66 |
| B | GLU69 |
| B | ARG91 |
| B | HOH180 |
| B | HOH328 |
| C | LYS88 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | BINDING: covalent |
| Chain | Residue | Details |
| A | CYS14 | |
| A | CYS17 | |
| B | CYS14 | |
| B | CYS17 | |
| C | CYS14 | |
| C | CYS17 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 3 |
| Details | BINDING: axial binding residue => ECO:0000255|PROSITE-ProRule:PRU00433, ECO:0000269|PubMed:5545094 |
| Chain | Residue | Details |
| A | HIS18 | |
| B | HIS18 | |
| C | HIS18 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 3 |
| Details | BINDING: axial binding residue |
| Chain | Residue | Details |
| A | MET80 | |
| B | MET80 | |
| C | MET80 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 3 |
| Details | MOD_RES: N-acetylglycine => ECO:0000269|PubMed:14469771 |
| Chain | Residue | Details |
| A | GLY1 | |
| B | GLY1 | |
| C | GLY1 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 6 |
| Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P62894 |
| Chain | Residue | Details |
| A | TYR48 | |
| A | TYR97 | |
| B | TYR48 | |
| B | TYR97 | |
| C | TYR48 | |
| C | TYR97 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 3 |
| Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P62897 |
| Chain | Residue | Details |
| A | LYS55 | |
| B | LYS55 | |
| C | LYS55 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 3 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62897 |
| Chain | Residue | Details |
| A | LYS72 | |
| B | LYS72 | |
| C | LYS72 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 3 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P62897 |
| Chain | Residue | Details |
| A | LYS99 | |
| B | LYS99 | |
| C | LYS99 |
