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3O0F

Crystal structure of a putative metal-dependent phosphoesterase (BAD_1165) from bifidobacterium adolescentis atcc 15703 at 1.94 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003824molecular_functioncatalytic activity
A0004534molecular_function5'-3' RNA exonuclease activity
A0006259biological_processDNA metabolic process
A0035312molecular_function5'-3' DNA exonuclease activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE AMP A 301
ChainResidue
AASP24
APHE165
AGLY265
ALYS266
APO4305
AEDO307
AHOH362
AHOH467
AHOH474
AHIS85
AARG109
AARG112
AGLY144
AARG145
APRO146
AARG161
ASER162

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 302
ChainResidue
AHIS19
AASP24
AHIS49
AHIS262
APO4305

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE A 303
ChainResidue
AGLU74
AHIS85
AHIS202
AFE304
APO4305
AHOH483

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE A 304
ChainResidue
AHIS17
AHIS19
AGLU74
AASP260
AFE303
APO4305
AHOH483

site_idAC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PO4 A 305
ChainResidue
AHIS19
AASP24
AHIS49
AGLU74
AHIS85
AASP260
AHIS262
ALYS266
AAMP301
AZN302
AFE303
AFE304
AHOH461
AHOH483

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 306
ChainResidue
AGLN35
ATRP261
AGLY269
ALEU270
AARG281
AHOH398
AHOH437

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 307
ChainResidue
AASP24
AHIS49
AARG109
ATHR142
AGLY144
APRO146
AAMP301

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PDB entries from 2024-06-26

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