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3NYY

Crystal structure of a putative glycyl-glycine endopeptidase lytM (RUMGNA_02482) from Ruminococcus gnavus ATCC 29149 at 1.60 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 2PE A 280
ChainResidue
APHE32
AALA209
ALEU211
AGLU212
AHOH296
AHOH336
AGLN97
ATRP98
AGLN101
ALYS180
ATRP188
AASP206
ASER207
ATYR208

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 2PE A 281
ChainResidue
ALYS59
AGLN60
AALA62
AHIS152
AGLU179
ATYR199
ATYR201
ATYR249
ALYS251
ATHR254
AGLU255
AGLU256
AHOH326
AHOH417
AHOH546
AHOH547
AHOH548

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE 2PE A 282
ChainResidue
ASER51
AGLU52
ATHR53
AARG81
ALYS161
AASN162
ASO4286
AHOH404
AHOH499
AHOH553
AHOH555

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 283
ChainResidue
AARG46
AARG144
AARG150
AHOH319
AHOH360

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 284
ChainResidue
ATYR95
ATRP104
AARG112
AHOH372
AHOH541

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 285
ChainResidue
ASER87
APRO88
ASER89
ALYS213
AHOH338
AHOH375

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 286
ChainResidue
AARG80
AARG81
AASN162
ATHR163
APRO164
A2PE282
AHOH404
AHOH439

223532

PDB entries from 2024-08-07

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