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3NUG

Crystal structure of wild type tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti

Functional Information from GO Data
ChainGOidnamespacecontents
A0016491molecular_functionoxidoreductase activity
A0042820biological_processvitamin B6 catabolic process
A0050235molecular_functionpyridoxal 4-dehydrogenase activity
B0016491molecular_functionoxidoreductase activity
B0042820biological_processvitamin B6 catabolic process
B0050235molecular_functionpyridoxal 4-dehydrogenase activity
C0016491molecular_functionoxidoreductase activity
C0042820biological_processvitamin B6 catabolic process
C0050235molecular_functionpyridoxal 4-dehydrogenase activity
D0016491molecular_functionoxidoreductase activity
D0042820biological_processvitamin B6 catabolic process
D0050235molecular_functionpyridoxal 4-dehydrogenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues30
DetailsBINDING SITE FOR RESIDUE NAD A 251
ChainResidue
AGLY14
AASN88
AALA89
ASER90
AILE139
AALA140
ASER141
ATYR154
ALYS158
APRO184
AGLY185
AGLN17
ALEU186
AILE187
ASER189
AGLY191
AVAL192
AHOH261
AHOH273
AHOH436
AHOH454
AHOH608
AGLY18
AHOH909
AILE19
AASP38
AILE39
AALA60
AASP61
AILE62

site_idAC2
Number of Residues33
DetailsBINDING SITE FOR RESIDUE NAD B 251
ChainResidue
BGLY14
BALA16
BGLN17
BGLY18
BILE19
BASP38
BILE39
BALA60
BASP61
BILE62
BASN88
BALA89
BSER90
BVAL92
BILE139
BALA140
BTYR154
BLYS158
BPRO184
BGLY185
BLEU186
BILE187
BSER189
BGLY191
BVAL192
BHOH255
BHOH258
BHOH266
BHOH327
BHOH328
BHOH503
BHOH546
BHOH800

site_idAC3
Number of Residues31
DetailsBINDING SITE FOR RESIDUE NAD C 251
ChainResidue
CGLY14
CGLN17
CGLY18
CILE19
CASP38
CILE39
CALA60
CASP61
CILE62
CASN88
CALA89
CSER90
CVAL92
CILE139
CALA140
CSER141
CTYR154
CLYS158
CPRO184
CGLY185
CLEU186
CILE187
CSER189
CGLY191
CVAL192
CHOH252
CHOH286
CHOH305
CHOH313
CHOH516
CHOH830

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACY C 1
ChainResidue
AGLN215
AHIS218
CARG232
CHOH320

site_idAC5
Number of Residues32
DetailsBINDING SITE FOR RESIDUE NAD D 251
ChainResidue
DGLN17
DGLY18
DILE19
DASP38
DILE39
DALA60
DASP61
DILE62
DASN88
DALA89
DSER90
DVAL92
DVAL111
DILE139
DALA140
DSER141
DTYR154
DLYS158
DPRO184
DGLY185
DLEU186
DILE187
DSER189
DGLY191
DVAL192
DHOH310
DHOH317
DHOH384
DHOH731
DHOH739
DHOH740
DGLY14

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SntffagtpnMaaYVAAKGGViGFTrALA
ChainResidueDetails
ASER141-ALA169

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P69167, ECO:0000255|PROSITE-ProRule:PRU10001
ChainResidueDetails
ATYR154
BTYR154
CTYR154
DTYR154

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P69167
ChainResidueDetails
ALEU11
ASER141
BLEU11
BSER141
CLEU11
CSER141
DLEU11
DSER141

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PDB entries from 2024-07-10

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