3NRJ
Crystal structure of probable yrbi family phosphatase from pseudomonas syringae pv.phaseolica 1448a complexed with magnesium
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| A | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| B | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| C | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| D | 0016787 | molecular_function | hydrolase activity |
| D | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| D | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| E | 0016787 | molecular_function | hydrolase activity |
| E | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| E | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| F | 0016787 | molecular_function | hydrolase activity |
| F | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| F | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| F | 0046872 | molecular_function | metal ion binding |
| G | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| G | 0016787 | molecular_function | hydrolase activity |
| G | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| G | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| G | 0046872 | molecular_function | metal ion binding |
| H | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| H | 0016787 | molecular_function | hydrolase activity |
| H | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| H | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| H | 0046872 | molecular_function | metal ion binding |
| I | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| I | 0016787 | molecular_function | hydrolase activity |
| I | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| I | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| I | 0046872 | molecular_function | metal ion binding |
| J | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| J | 0016787 | molecular_function | hydrolase activity |
| J | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| J | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| J | 0046872 | molecular_function | metal ion binding |
| K | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| K | 0016787 | molecular_function | hydrolase activity |
| K | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| K | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| K | 0046872 | molecular_function | metal ion binding |
| L | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| L | 0016787 | molecular_function | hydrolase activity |
| L | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| L | 0019143 | molecular_function | 3-deoxy-manno-octulosonate-8-phosphatase activity |
| L | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL A 188 |
| Chain | Residue |
| A | GLY50 |
| A | ARG77 |
| C | ARG69 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL A 189 |
| Chain | Residue |
| A | ARG69 |
| H | GLY50 |
| H | ARG77 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 190 |
| Chain | Residue |
| A | HOH624 |
| A | HOH630 |
| A | HOH1223 |
| A | ASP23 |
| A | ASP25 |
| A | ASP116 |
| site_id | AC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE PO4 A 191 |
| Chain | Residue |
| A | ASP23 |
| A | SER67 |
| A | GLY68 |
| A | ARG69 |
| A | GLU91 |
| A | LYS93 |
| A | PRO119 |
| A | HOH237 |
| A | HOH306 |
| A | HOH624 |
| A | HOH1223 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 188 |
| Chain | Residue |
| B | ARG77 |
| K | ARG69 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 189 |
| Chain | Residue |
| B | ARG69 |
| J | ARG77 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 190 |
| Chain | Residue |
| B | ASP23 |
| B | ASP25 |
| B | ASP116 |
| B | HOH202 |
| B | HOH203 |
| B | HOH565 |
| site_id | AC8 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PO4 B 191 |
| Chain | Residue |
| B | ASP23 |
| B | SER67 |
| B | GLY68 |
| B | ARG69 |
| B | GLU91 |
| B | LYS93 |
| B | PRO119 |
| B | HOH202 |
| B | HOH210 |
| B | HOH565 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL C 188 |
| Chain | Residue |
| C | GLY50 |
| C | ARG77 |
| D | ARG69 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG C 189 |
| Chain | Residue |
| C | ASP23 |
| C | ASP25 |
| C | ASP116 |
| C | HOH651 |
| C | HOH662 |
| C | HOH1094 |
| site_id | BC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE PO4 C 190 |
| Chain | Residue |
| C | ASP23 |
| C | SER67 |
| C | GLY68 |
| C | ARG69 |
| C | LYS93 |
| C | HOH195 |
| C | HOH651 |
| C | HOH1094 |
| site_id | BC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL D 188 |
| Chain | Residue |
| D | ARG77 |
| H | ARG69 |
| site_id | BC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG D 189 |
| Chain | Residue |
| D | ASP23 |
| D | ASP25 |
| D | ASP116 |
| D | HOH467 |
| D | HOH1057 |
| D | HOH1201 |
| site_id | BC5 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PO4 D 190 |
| Chain | Residue |
| D | ASP23 |
| D | SER67 |
| D | GLY68 |
| D | ARG69 |
| D | LYS93 |
| D | PRO119 |
| D | HOH206 |
| D | HOH389 |
| D | HOH467 |
| D | HOH1201 |
| site_id | BC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL E 188 |
| Chain | Residue |
| E | ARG77 |
| I | ARG69 |
| site_id | BC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG E 189 |
| Chain | Residue |
| E | ASP23 |
| E | ASP25 |
| E | ASP116 |
| E | HOH329 |
| E | HOH627 |
| E | HOH1502 |
| site_id | BC8 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE PO4 E 190 |
| Chain | Residue |
| E | ASP23 |
| E | SER67 |
| E | GLY68 |
| E | ARG69 |
| E | LYS93 |
| E | HOH191 |
| E | HOH329 |
| E | HOH1502 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL F 188 |
| Chain | Residue |
| E | ARG69 |
| F | GLY50 |
| F | ARG77 |
| site_id | CC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG F 189 |
| Chain | Residue |
| F | ASP116 |
| F | HOH383 |
| F | HOH959 |
| F | HOH1546 |
| F | ASP23 |
| F | ASP25 |
| site_id | CC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE PO4 F 190 |
| Chain | Residue |
| F | ASP23 |
| F | SER67 |
| F | GLY68 |
| F | ARG69 |
| F | LYS93 |
| F | PRO119 |
| F | HOH202 |
| F | HOH383 |
| F | HOH1546 |
| site_id | CC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL F 191 |
| Chain | Residue |
| F | ARG32 |
| G | ARG32 |
| I | ARG32 |
| site_id | CC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL G 188 |
| Chain | Residue |
| F | ARG69 |
| G | ARG77 |
| site_id | CC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL G 189 |
| Chain | Residue |
| G | ARG69 |
| I | GLY50 |
| I | ARG77 |
| site_id | CC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG G 190 |
| Chain | Residue |
| G | ASP23 |
| G | ASP25 |
| G | ASP116 |
| G | HOH294 |
| G | HOH929 |
| G | HOH1126 |
| site_id | CC7 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE PO4 G 191 |
| Chain | Residue |
| G | ASP23 |
| G | SER67 |
| G | GLY68 |
| G | ARG69 |
| G | LYS93 |
| G | PRO119 |
| G | HOH294 |
| G | HOH298 |
| G | HOH306 |
| G | HOH605 |
| G | HOH1126 |
| site_id | CC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG H 188 |
| Chain | Residue |
| H | ASP23 |
| H | ASP25 |
| H | ASP116 |
| H | HOH434 |
| H | HOH699 |
| H | HOH808 |
| site_id | CC9 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PO4 H 189 |
| Chain | Residue |
| H | ASP23 |
| H | SER67 |
| H | GLY68 |
| H | ARG69 |
| H | GLU91 |
| H | LYS93 |
| H | HOH198 |
| H | HOH221 |
| H | HOH434 |
| H | HOH699 |
| site_id | DC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG I 188 |
| Chain | Residue |
| I | ASP23 |
| I | ASP25 |
| I | ASP116 |
| I | HOH1036 |
| I | HOH1140 |
| I | HOH1141 |
| site_id | DC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE PO4 I 189 |
| Chain | Residue |
| I | ASP23 |
| I | SER67 |
| I | GLY68 |
| I | ARG69 |
| I | LYS93 |
| I | PRO119 |
| I | HOH198 |
| I | HOH1036 |
| I | HOH1140 |
| site_id | DC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG J 188 |
| Chain | Residue |
| J | ASP23 |
| J | ASP25 |
| J | ASP116 |
| J | HOH194 |
| J | HOH761 |
| J | HOH914 |
| site_id | DC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PO4 J 189 |
| Chain | Residue |
| J | ASP23 |
| J | SER67 |
| J | GLY68 |
| J | ARG69 |
| J | GLU91 |
| J | LYS93 |
| J | HOH194 |
| J | HOH205 |
| J | HOH281 |
| J | HOH914 |
| site_id | DC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL K 188 |
| Chain | Residue |
| K | GLY50 |
| K | ARG77 |
| L | ARG69 |
| site_id | DC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG K 189 |
| Chain | Residue |
| K | ASP23 |
| K | ASP25 |
| K | ASP116 |
| K | HOH681 |
| K | HOH1101 |
| K | HOH1178 |
| site_id | DC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE PO4 K 190 |
| Chain | Residue |
| K | ASP23 |
| K | SER67 |
| K | GLY68 |
| K | ARG69 |
| K | LYS93 |
| K | HOH650 |
| K | HOH681 |
| K | HOH1178 |
| site_id | DC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL L 188 |
| Chain | Residue |
| J | ARG69 |
| L | ARG77 |
| site_id | DC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG L 189 |
| Chain | Residue |
| L | ASP23 |
| L | ASP25 |
| L | ASP116 |
| L | HOH614 |
| L | HOH629 |
| L | HOH1460 |
| site_id | EC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PO4 L 190 |
| Chain | Residue |
| L | ASP23 |
| L | SER67 |
| L | GLY68 |
| L | ARG69 |
| L | GLU91 |
| L | LYS93 |
| L | PRO119 |
| L | HOH199 |
| L | HOH614 |
| L | HOH629 |
