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3NOB

Structure of K11-linked di-ubiquitin

Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 77
ChainResidue
AASP39
AGLN40
AARG74
AHOH132
BGLY35
EGLY35
FASP39
FGLN40
FARG74

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 78
ChainResidue
AILE44
APHE45
AALA46
AGLY47
AHIS68
CHIS68

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 B 77
ChainResidue
AGLY35
BASP39
BGLN40
BARG74
BHOH86
BHOH88
BHOH107
EASP39
EGLN40
FGLY35

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 78
ChainResidue
BLYS63
DLYS6
DHIS68

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 77
ChainResidue
DLYS27
DGLU51
DASP52

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 E 77
ChainResidue
AGLY53
ETHR14
ELEU15
EGLU16

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 H 77
ChainResidue
HLYS27
HGLN41
HARG42
HGLN49
HARG72

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ALYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
AARG54
EARG72
FARG54
FARG72
GARG54
GARG72
HARG54
HARG72
AARG72
BARG54
BARG72
CARG54
CARG72
DARG54
DARG72
EARG54

site_idSWS_FT_FI2
Number of Residues8
DetailsSITE: Essential for function
ChainResidueDetails
AHIS68
BHIS68
CHIS68
DHIS68
EHIS68
FHIS68
GHIS68
HHIS68

site_idSWS_FT_FI3
Number of Residues8
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25527291
ChainResidueDetails
ASER65
BSER65
CSER65
DSER65
ESER65
FSER65
GSER65
HSER65

site_idSWS_FT_FI4
Number of Residues8
DetailsMOD_RES: (Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457
ChainResidueDetails
ATHR66
BTHR66
CTHR66
DTHR66
ETHR66
FTHR66
GTHR66
HTHR66

site_idSWS_FT_FI5
Number of Residues8
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000269|PubMed:28525742
ChainResidueDetails
AGLY76
BGLY76
CGLY76
DGLY76
EGLY76
FGLY76
GGLY76
HGLY76

site_idSWS_FT_FI6
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603
ChainResidueDetails
ALYS6
BLYS6
CLYS6
DLYS6
ELYS6
FLYS6
GLYS6
HLYS6

site_idSWS_FT_FI7
Number of Residues16
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
ChainResidueDetails
EGLY76
FGLY76
GGLY76
HGLY76
AGLY76
BGLY76
CGLY76
DGLY76

site_idSWS_FT_FI8
Number of Residues16
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
ChainResidueDetails
ALYS11
ELYS48
FLYS11
FLYS48
GLYS11
GLYS48
HLYS11
HLYS48
ALYS48
BLYS11
BLYS48
CLYS11
CLYS48
DLYS11
DLYS48
ELYS11

site_idSWS_FT_FI9
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
ChainResidueDetails
ALYS27
BLYS27
CLYS27
DLYS27
ELYS27
FLYS27
GLYS27
HLYS27

site_idSWS_FT_FI10
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127
ChainResidueDetails
ALYS29
BLYS29
CLYS29
DLYS29
ELYS29
FLYS29
GLYS29
HLYS29

site_idSWS_FT_FI11
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577
ChainResidueDetails
ALYS33
BLYS33
CLYS33
DLYS33
ELYS33
FLYS33
GLYS33
HLYS33

site_idSWS_FT_FI12
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106
ChainResidueDetails
ALYS63
BLYS63
CLYS63
DLYS63
ELYS63
FLYS63
GLYS63
HLYS63

222036

PDB entries from 2024-07-03

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