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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3NOB

Structure of K11-linked di-ubiquitin

Functional Information from PDB Data

site_id	AC1
Number of Residues	9
Details	BINDING SITE FOR RESIDUE SO4 A 77

Chain	Residue
A	ASP39
A	GLN40
A	ARG74
A	HOH132
B	GLY35
E	GLY35
F	ASP39
F	GLN40
F	ARG74

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 A 78

Chain	Residue
A	ILE44
A	PHE45
A	ALA46
A	GLY47
A	HIS68
C	HIS68

site_id	AC3
Number of Residues	10
Details	BINDING SITE FOR RESIDUE SO4 B 77

Chain	Residue
A	GLY35
B	ASP39
B	GLN40
B	ARG74
B	HOH86
B	HOH88
B	HOH107
E	ASP39
E	GLN40
F	GLY35

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 B 78

Chain	Residue
B	LYS63
D	LYS6
D	HIS68

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 D 77

Chain	Residue
D	LYS27
D	GLU51
D	ASP52

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 E 77

Chain	Residue
A	GLY53
E	THR14
E	LEU15
E	GLU16

site_id	AC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 H 77

Chain	Residue
H	LYS27
H	GLN41
H	ARG42
H	GLN49
H	ARG72

Functional Information from PROSITE/UniProt

site_id	PS00299
Number of Residues	26
Details	UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD

Chain	Residue	Details
A	LYS27-ASP52

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	16
Details	SITE: Interacts with activating enzyme

Chain	Residue	Details
A	ARG54
E	ARG72
F	ARG54
F	ARG72
G	ARG54
G	ARG72
H	ARG54
H	ARG72
A	ARG72
B	ARG54
B	ARG72
C	ARG54
C	ARG72
D	ARG54
D	ARG72
E	ARG54

site_id	SWS_FT_FI2
Number of Residues	8
Details	SITE: Essential for function

Chain	Residue	Details
A	HIS68
B	HIS68
C	HIS68
D	HIS68
E	HIS68
F	HIS68
G	HIS68
H	HIS68

site_id	SWS_FT_FI3
Number of Residues	8
Details	MOD_RES: Phosphoserine; by PINK1 => ECO:0000269\|PubMed:24660806, ECO:0000269\|PubMed:24751536, ECO:0000269\|PubMed:24784582, ECO:0000269\|PubMed:25527291

Chain	Residue	Details
A	SER65
B	SER65
C	SER65
D	SER65
E	SER65
F	SER65
G	SER65
H	SER65

site_id	SWS_FT_FI4
Number of Residues	8
Details	MOD_RES: (Microbial infection) ADP-ribosylthreonine => ECO:0000269\|PubMed:32330457

Chain	Residue	Details
A	THR66
B	THR66
C	THR66
D	THR66
E	THR66
F	THR66
G	THR66
H	THR66

site_id	SWS_FT_FI5
Number of Residues	8
Details	MOD_RES: ADP-ribosylglycine => ECO:0000269\|PubMed:28525742

Chain	Residue	Details
A	GLY76
B	GLY76
C	GLY76
D	GLY76
E	GLY76
F	GLY76
G	GLY76
H	GLY76

site_id	SWS_FT_FI6
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269\|PubMed:16443603

Chain	Residue	Details
A	LYS6
B	LYS6
C	LYS6
D	LYS6
E	LYS6
F	LYS6
G	LYS6
H	LYS6

site_id	SWS_FT_FI7
Number of Residues	16
Details	CROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)

Chain	Residue	Details
E	GLY76
F	GLY76
G	GLY76
H	GLY76
A	GLY76
B	GLY76
C	GLY76
D	GLY76

site_id	SWS_FT_FI8
Number of Residues	16
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269\|PubMed:16443603, ECO:0000269\|PubMed:16543144

Chain	Residue	Details
A	LYS11
E	LYS48
F	LYS11
F	LYS48
G	LYS11
G	LYS48
H	LYS11
H	LYS48
A	LYS48
B	LYS11
B	LYS48
C	LYS11
C	LYS48
D	LYS11
D	LYS48
E	LYS11

site_id	SWS_FT_FI9
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305\|PubMed:15466860

Chain	Residue	Details
A	LYS27
B	LYS27
C	LYS27
D	LYS27
E	LYS27
F	LYS27
G	LYS27
H	LYS27

site_id	SWS_FT_FI10
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269\|PubMed:16543144, ECO:0000269\|PubMed:25752573, ECO:0000269\|PubMed:25752577, ECO:0000269\|PubMed:34239127

Chain	Residue	Details
A	LYS29
B	LYS29
C	LYS29
D	LYS29
E	LYS29
F	LYS29
G	LYS29
H	LYS29

site_id	SWS_FT_FI11
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269\|PubMed:25752577

Chain	Residue	Details
A	LYS33
B	LYS33
C	LYS33
D	LYS33
E	LYS33
F	LYS33
G	LYS33
H	LYS33

site_id	SWS_FT_FI12
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269\|PubMed:16543144, ECO:0000269\|PubMed:18719106

Chain	Residue	Details
A	LYS63
B	LYS63
C	LYS63
D	LYS63
E	LYS63
F	LYS63
G	LYS63
H	LYS63

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PDB entries from 2024-07-24

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