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3NGS

Structure of Leishmania nucleoside diphosphate kinase b with ordered nucleotide-binding loop

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
A0009142biological_processnucleoside triphosphate biosynthetic process
A0016301molecular_functionkinase activity
A0097014cellular_componentciliary plasm
B0004550molecular_functionnucleoside diphosphate kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
B0009142biological_processnucleoside triphosphate biosynthetic process
B0016301molecular_functionkinase activity
B0097014cellular_componentciliary plasm
C0004550molecular_functionnucleoside diphosphate kinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006183biological_processGTP biosynthetic process
C0006228biological_processUTP biosynthetic process
C0006241biological_processCTP biosynthetic process
C0009142biological_processnucleoside triphosphate biosynthetic process
C0016301molecular_functionkinase activity
C0097014cellular_componentciliary plasm
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 152
ChainResidue
ALYS11
ATYR51
AARG104
AASN114
ACYS116
AHIS117
APO4153
AHOH248
AHOH288

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 153
ChainResidue
AARG87
ATHR93
AARG104
AHIS117
AGLY118
APO4152
AHOH220

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE DTT B 152
ChainResidue
AHOH276
BLYS11
BHIS50
BARG87
BTHR93
BASN114
BHIS117
BHOH289

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 C 152
ChainResidue
CLYS11
CTHR93
CASN114
CCYS116
CHIS117
CHOH353
CHOH361

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NvcHGSDSV
ChainResidueDetails
AASN114-VAL122

219869

PDB entries from 2024-05-15

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