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3NGN

Crystal structure of the human CNOT6L nuclease domain in complex with AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004535molecular_functionpoly(A)-specific ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE AMP A 556
ChainResidue
AGLU240
AHIS529
AHOH592
AHOH614
AHIS360
ATRP363
APRO365
ALYS371
AASP410
AASN412
AASN479
APHE484

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AMP A 557
ChainResidue
ATRP174
ASER188
ATHR190
AILE271
AMET272
ASER273
AGLU276
AGLN535
AHOH558

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"27013054","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27013054","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NGN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5DV2","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NGN","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NGQ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27013054","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5DV2","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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