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3NDR

Crystal structure of tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti

Functional Information from GO Data
ChainGOidnamespacecontents
A0016491molecular_functionoxidoreductase activity
A0042820biological_processvitamin B6 catabolic process
A0050235molecular_functionpyridoxal 4-dehydrogenase activity
B0016491molecular_functionoxidoreductase activity
B0042820biological_processvitamin B6 catabolic process
B0050235molecular_functionpyridoxal 4-dehydrogenase activity
C0016491molecular_functionoxidoreductase activity
C0042820biological_processvitamin B6 catabolic process
C0050235molecular_functionpyridoxal 4-dehydrogenase activity
D0016491molecular_functionoxidoreductase activity
D0042820biological_processvitamin B6 catabolic process
D0050235molecular_functionpyridoxal 4-dehydrogenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues27
DetailsBINDING SITE FOR RESIDUE NAD A 251
ChainResidue
AGLY14
AASN88
AALA89
ASER90
AVAL111
AILE139
AALA140
ASER141
ATYR154
ALYS158
APRO184
AGLN17
AGLY185
ALEU186
AILE187
ASER189
AGLY191
AVAL192
AHOH301
AHOH357
AGLY18
AILE19
AASP38
AILE39
AALA60
AASP61
AILE62

site_idAC2
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAD B 251
ChainResidue
BGLY14
BGLN17
BGLY18
BILE19
BASP38
BILE39
BALA60
BASP61
BILE62
BASN88
BALA89
BSER90
BILE139
BALA140
BSER141
BTYR154
BLYS158
BPRO184
BGLY185
BLEU186
BILE187
BSER189
BGLY191
BVAL192
BHOH312
BHOH347

site_idAC3
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAD C 251
ChainResidue
CGLY14
CGLN17
CGLY18
CILE19
CASP38
CILE39
CALA60
CASP61
CILE62
CASN88
CALA89
CSER90
CVAL92
CILE139
CALA140
CSER141
CTYR154
CLYS158
CPRO184
CGLY185
CLEU186
CILE187
CSER189
CGLY191
CVAL192

site_idAC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAD D 251
ChainResidue
DSER189
DGLY191
DVAL192
DHOH350
DGLY14
DGLN17
DGLY18
DILE19
DASP38
DILE39
DALA60
DASP61
DILE62
DASN88
DALA89
DSER90
DILE139
DALA140
DSER141
DTYR154
DLYS158
DPRO184
DGLY185
DLEU186
DILE187

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SntffagtpnMaaYVAAKGGViGFTrALA
ChainResidueDetails
ASER141-ALA169

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P69167, ECO:0000255|PROSITE-ProRule:PRU10001
ChainResidueDetails
ATYR154
BTYR154
CTYR154
DTYR154

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P69167
ChainResidueDetails
ALEU11
ASER141
BLEU11
CLEU11
CSER141
DLEU11
DSER141
BSER141

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PDB entries from 2024-06-12

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