3NB3

The host outer membrane proteins OmpA and OmpC are packed at specific sites in the Shigella phage Sf6 virion as structural components

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0009279	cellular_component	cell outer membrane
A	0015288	molecular_function	porin activity
A	0016020	cellular_component	membrane
B	0009279	cellular_component	cell outer membrane
B	0015288	molecular_function	porin activity
B	0016020	cellular_component	membrane
C	0009279	cellular_component	cell outer membrane
C	0015288	molecular_function	porin activity
C	0016020	cellular_component	membrane
D	0001618	molecular_function	virus receptor activity
D	0005515	molecular_function	protein binding
D	0006811	biological_process	monoatomic ion transport
D	0006974	biological_process	DNA damage response
D	0009279	cellular_component	cell outer membrane
D	0015288	molecular_function	porin activity
D	0016020	cellular_component	membrane
D	0034220	biological_process	monoatomic ion transmembrane transport
D	0042802	molecular_function	identical protein binding
D	0046718	biological_process	symbiont entry into host cell
D	0046813	biological_process	receptor-mediated virion attachment to host cell
D	0046872	molecular_function	metal ion binding
D	0046930	cellular_component	pore complex

Functional Information from PROSITE/UniProt

site_id	PS00576
Number of Residues	17
Details	GRAM_NEG_PORIN General diffusion Gram-negative porins signature. VdvGatYyFnKnmSTYV

Chain	Residue	Details
D	VAL298-VAL314

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site_id	PS01068
Number of Residues	45
Details	OMPA_1 OmpA-like domain. VlGyTDri.GSdaYNqgLSERRAqsVvdyLiskg.IpadkIsarGmG

Chain	Residue	Details
A	VAL236-GLY280

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	46
Details	TOPO_DOM: Periplasmic => ECO:0000269|PubMed:16949612

Chain	Residue	Details
D	ALA1-ASP12
C	ASN46-TYR48
C	ILE87-ASP90
C	ILE131-GLU134
D	GLU43-GLY52
D	LYS81-VAL85
D	THR134-GLY142
D	ASP187-GLY190
D	ASP228-ASN231
D	GLN266-GLY270
D	PHE306-ASN309
D	PHE346

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site_id	SWS_FT_FI2
Number of Residues	133
Details	TRANSMEM: Beta stranded

Chain	Residue	Details
D	LEU13-HIS21
D	TYR221-TYR227
D	ILE232-THR239
D	SER249-TYR265
D	LEU271-LEU278
D	VAL298-TYR305
D	MET310-LYS317
D	VAL338-GLN345
C	ILE135-TRP143
C	MET161-PHE170
D	GLN33-GLY42
D	TYR53-ASN63
D	SER71-LEU80
D	GLY86-TYR94
D	MET121-ASN133
D	LEU143-GLN150
D	VAL180-TYR186
D	PHE191-SER198

---

site_id	SWS_FT_FI3
Number of Residues	135
Details	TOPO_DOM: Extracellular => ECO:0000269|PubMed:16949612

Chain	Residue	Details
D	TYR22-ASP32
D	SER64-ASN70
D	GLY95-PHE120
D	GLY151-GLY179
D	SER199-THR220
D	GLN240-GLY248
D	GLN279-TYR297
D	ILE318-ILE337

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site_id	SWS_FT_FI4
Number of Residues	3
Details	BINDING: BINDING => ECO:0007744|PDB:2J1N

Chain	Residue	Details
D	ASN319
D	LEU321
D	THR334
B	PRO121-ALA130
C	LEU91-GLY99
C	PRO121-ALA130

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site_id	SWS_FT_FI5
Number of Residues	108
Details	TOPO_DOM: Extracellular => ECO:0000269|PubMed:9808047, ECO:0000305|PubMed:11276254

Chain	Residue	Details
A	MET100-SER120
A	THR144-GLY160
B	MET100-SER120
B	THR144-GLY160
C	MET100-SER120
C	THR144-GLY160

---

site_id	SWS_FT_FI6
Number of Residues	462
Details	TOPO_DOM: Periplasmic => ECO:0000305|PubMed:11276254, ECO:0000305|PubMed:9808047

Chain	Residue	Details
A	GLY171-ALA325
B	GLY171-ALA325
C	GLY171-ALA325

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site_id	SWS_FT_FI7
Number of Residues	6
Details	SITE: Part of salt bridge gating mechanism => ECO:0000269|PubMed:17041590

Chain	Residue	Details
A	GLU52
A	ARG138
B	GLU52
B	ARG138
C	GLU52
C	ARG138

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site_id	SWS_FT_FI8
Number of Residues	6
Details	MOD_RES: O3-poly(beta-hydroxybutyryl)serine => ECO:0000269|PubMed:17659252

Chain	Residue	Details
A	SER163
A	SER167
B	SER163
B	SER167
C	SER163
C	SER167

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