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3N71

Crystal structure of cardiac specific histone methyltransferase SmyD1

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003714molecular_functiontranscription corepressor activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0006338biological_processchromatin remodeling
A0007507biological_processheart development
A0008168molecular_functionmethyltransferase activity
A0010831biological_processpositive regulation of myotube differentiation
A0032259biological_processmethylation
A0035914biological_processskeletal muscle cell differentiation
A0042800molecular_functionhistone H3K4 methyltransferase activity
A0045663biological_processpositive regulation of myoblast differentiation
A0045892biological_processnegative regulation of DNA-templated transcription
A0046872molecular_functionmetal ion binding
A0140999molecular_functionhistone H3K4 trimethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE SFG A 491
ChainResidue
ALYS17
AHIS206
ATYR252
ATYR270
APHE272
AARG19
AGLN133
AHIS135
AASN180
AGLY202
ALEU203
AVAL204
AASN205

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MES A 492
ChainResidue
AVAL114
AASP130
APHE165
ASER166
ATYR169

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 493
ChainResidue
APHE44
AASP45
ASER46
AGLU102

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 494
ChainResidue
ALEU47
AARG58
AGLN191

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 495
ChainResidue
ACYS52
ACYS55
ACYS74
ACYS78

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 496
ChainResidue
ACYS65
ACYS68
AHIS86
ACYS90

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 497
ChainResidue
ACYS208
ACYS274
ACYS276
ACYS279

Functional Information from PROSITE/UniProt
site_idPS01360
Number of Residues39
DetailsZF_MYND_1 Zinc finger MYND-type signature. Cht..Cfkrqeklhr........CgqCkfahYCdrtCqkdawln..Hkne.C
ChainResidueDetails
ACYS52-CYS90

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues38
DetailsZN_FING: MYND-type => ECO:0000255|PROSITE-ProRule:PRU00134
ChainResidueDetails
ACYS52-CYS90

site_idSWS_FT_FI2
Number of Residues7
DetailsBINDING:
ChainResidueDetails
ACYS274
ACYS276
ACYS279
ALYS17
AHIS135
AASN205
ACYS208

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00134
ChainResidueDetails
ACYS74
ACYS78
AHIS86
ACYS90
ACYS52
ACYS55
ACYS65
ACYS68

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ATYR270

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PDB entries from 2024-06-12

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