3MVZ
X-ray structure of the (hydro)peroxo intermediate NikA/1-Int", after monohydroxylation of the iron complex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0015675 | biological_process | nickel cation transport |
| A | 0015833 | biological_process | peptide transport |
| A | 0016020 | cellular_component | membrane |
| A | 0016151 | molecular_function | nickel cation binding |
| A | 0020037 | molecular_function | heme binding |
| A | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
| A | 0042597 | cellular_component | periplasmic space |
| A | 0043190 | cellular_component | ATP-binding cassette (ABC) transporter complex |
| A | 0046914 | molecular_function | transition metal ion binding |
| A | 0050919 | biological_process | negative chemotaxis |
| A | 0051540 | molecular_function | metal cluster binding |
| A | 0055052 | cellular_component | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing |
| A | 0055085 | biological_process | transmembrane transport |
| A | 0098716 | biological_process | nickel cation import across plasma membrane |
| A | 1904680 | molecular_function | peptide transmembrane transporter activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0015675 | biological_process | nickel cation transport |
| B | 0015833 | biological_process | peptide transport |
| B | 0016020 | cellular_component | membrane |
| B | 0016151 | molecular_function | nickel cation binding |
| B | 0020037 | molecular_function | heme binding |
| B | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
| B | 0042597 | cellular_component | periplasmic space |
| B | 0043190 | cellular_component | ATP-binding cassette (ABC) transporter complex |
| B | 0046914 | molecular_function | transition metal ion binding |
| B | 0050919 | biological_process | negative chemotaxis |
| B | 0051540 | molecular_function | metal cluster binding |
| B | 0055052 | cellular_component | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing |
| B | 0055085 | biological_process | transmembrane transport |
| B | 0098716 | biological_process | nickel cation import across plasma membrane |
| B | 1904680 | molecular_function | peptide transmembrane transporter activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT A 503 |
| Chain | Residue |
| A | LYS52 |
| A | ARG68 |
| A | ASP69 |
| A | HOH622 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACT A 504 |
| Chain | Residue |
| A | ASN261 |
| A | LEU263 |
| A | HOH727 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT A 505 |
| Chain | Residue |
| A | PHE419 |
| A | GLN423 |
| A | HOH914 |
| A | ASN235 |
| A | ALA237 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE ACT A 506 |
| Chain | Residue |
| A | ASN482 |
| A | GLN496 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 507 |
| Chain | Residue |
| A | ARG384 |
| A | HOH854 |
| A | HOH861 |
| B | LEU430 |
| B | ARG457 |
| B | HOH568 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 508 |
| Chain | Residue |
| A | LEU167 |
| A | GLN168 |
| A | HOH660 |
| B | THR211 |
| B | ASP213 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL A 509 |
| Chain | Residue |
| A | ASN149 |
| A | LYS157 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL A 510 |
| Chain | Residue |
| A | GLN361 |
| A | ASP370 |
| A | VAL371 |
| A | SER372 |
| A | LEU373 |
| B | ASN149 |
| B | LYS157 |
| B | HOH582 |
| B | HOH782 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE FE A 511 |
| Chain | Residue |
| A | BHN512 |
| A | PER513 |
| site_id | BC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE BHN A 512 |
| Chain | Residue |
| A | TYR22 |
| A | MET27 |
| A | ARG97 |
| A | TRP100 |
| A | ARG137 |
| A | TRP398 |
| A | HIS416 |
| A | THR490 |
| A | FE511 |
| A | PER513 |
| A | HOH607 |
| A | HOH676 |
| A | HOH720 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE PER A 513 |
| Chain | Residue |
| A | ARG137 |
| A | FE511 |
| A | BHN512 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 514 |
| Chain | Residue |
| A | ASN220 |
| A | GLU247 |
| A | THR490 |
| A | GOL521 |
| A | HOH548 |
| A | HOH928 |
| site_id | BC4 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL A 515 |
| Chain | Residue |
| A | ARG89 |
| A | LEU92 |
| A | ARG95 |
| A | ILE107 |
| A | VAL108 |
| A | ASP109 |
| A | VAL110 |
| A | ASN281 |
| A | HOH728 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 516 |
| Chain | Residue |
| A | GLU102 |
| A | ASN105 |
| A | LYS123 |
| A | THR228 |
| A | ARG231 |
| A | HOH584 |
| site_id | BC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 517 |
| Chain | Residue |
| A | VAL273 |
| A | ASN274 |
| A | LYS275 |
| A | LYS276 |
| A | GLN309 |
| A | TYR310 |
| A | HOH922 |
| A | HOH1120 |
| site_id | BC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 518 |
| Chain | Residue |
| A | GLU82 |
| A | ARG89 |
| A | PRO144 |
| A | PHE147 |
| A | HIS150 |
| A | HOH763 |
| A | HOH959 |
| A | HOH1203 |
| site_id | BC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 519 |
| Chain | Residue |
| A | ASN302 |
| A | GLY304 |
| A | HOH900 |
| B | PHE229 |
| B | ALA230 |
| B | SER233 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACT A 520 |
| Chain | Residue |
| A | HOH646 |
| A | THR23 |
| A | GLN26 |
| site_id | CC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 521 |
| Chain | Residue |
| A | TRP10 |
| A | GLY219 |
| A | ASN220 |
| A | GLY222 |
| A | LEU223 |
| A | GOL514 |
| site_id | CC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT A 522 |
| Chain | Residue |
| A | ASP331 |
| A | ARG365 |
| A | HOH1105 |
| B | LYS148 |
| site_id | CC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACT A 523 |
| Chain | Residue |
| A | THR441 |
| A | HIS442 |
| A | ASP443 |
| site_id | CC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ACT B 503 |
| Chain | Residue |
| B | THR23 |
| B | GLN26 |
| B | GLU378 |
| B | PER508 |
| B | HOH626 |
| B | HOH697 |
| site_id | CC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT B 504 |
| Chain | Residue |
| B | VAL273 |
| B | LYS275 |
| B | LYS276 |
| B | TYR310 |
| site_id | CC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 505 |
| Chain | Residue |
| B | TRP10 |
| B | PRO11 |
| B | GLY219 |
| B | ASN220 |
| B | GLY222 |
| B | LEU223 |
| B | GOL509 |
| site_id | CC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE FE B 506 |
| Chain | Residue |
| B | BHN507 |
| B | PER508 |
| site_id | CC8 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE BHN B 507 |
| Chain | Residue |
| B | TYR22 |
| B | MET27 |
| B | ARG97 |
| B | TRP100 |
| B | ARG137 |
| B | TRP398 |
| B | THR490 |
| B | FE506 |
| B | PER508 |
| B | HOH635 |
| B | HOH1202 |
| site_id | CC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE PER B 508 |
| Chain | Residue |
| B | ARG137 |
| B | ACT503 |
| B | FE506 |
| B | BHN507 |
| site_id | DC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL B 509 |
| Chain | Residue |
| B | ASN220 |
| B | GLU247 |
| B | ARG396 |
| B | MET472 |
| B | ALA489 |
| B | THR490 |
| B | GOL505 |
| B | HOH577 |
| site_id | DC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL B 510 |
| Chain | Residue |
| A | LEU21 |
| A | TYR22 |
| A | THR23 |
| A | ARG97 |
| A | HOH644 |
| A | HOH748 |
| B | LYS314 |
| B | HOH657 |
| site_id | DC3 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL B 511 |
| Chain | Residue |
| A | ASP43 |
| A | PRO299 |
| B | GLN241 |
| B | ASN482 |
| B | ILE483 |
| B | PRO484 |
| B | TYR485 |
| B | HOH526 |
| B | HOH695 |
| site_id | DC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL B 512 |
| Chain | Residue |
| B | GLU221 |
| B | VAL249 |
| B | SER353 |
| B | MET356 |
| B | PHE394 |
| B | ARG396 |
| B | HOH848 |
| B | HOH1114 |
Functional Information from PROSITE/UniProt
| site_id | PS01040 |
| Number of Residues | 23 |
| Details | SBP_BACTERIAL_5 Bacterial extracellular solute-binding proteins, family 5 signature. AkswthseDgkTWtFtLRDDVKF |
| Chain | Residue | Details |
| A | ALA51-PHE73 |
