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3MS9

ABL kinase in complex with imatinib and a fragment (FRAG1) in the myristate pocket

Functional Information from GO Data
ChainGOidnamespacecontents
A0004672molecular_functionprotein kinase activity
A0004713molecular_functionprotein tyrosine kinase activity
A0005524molecular_functionATP binding
A0006468biological_processprotein phosphorylation
B0004672molecular_functionprotein kinase activity
B0004713molecular_functionprotein tyrosine kinase activity
B0005524molecular_functionATP binding
B0006468biological_processprotein phosphorylation
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE STI A 1
ChainResidue
AHOH75
AMET318
AILE360
AHIS361
ALEU370
AALA380
AASP381
APHE382
AVAL256
AALA269
ALYS271
AGLU286
AMET290
AILE293
AVAL299
ATHR315

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MS9 A 516
ChainResidue
AHOH44
AALA337
ALEU341
ALEU429
AALA433
AGLY463
APRO465

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 2
ChainResidue
AHOH131
AILE360
AHOH535
AHOH594

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 4
ChainResidue
ATHR319
AGLY372

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 5
ChainResidue
ATYR253
AGLY321
AASN322

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE STI B 1
ChainResidue
BHOH165
BALA269
BLYS271
BGLU286
BMET290
BVAL299
BILE313
BTHR315
BPHE317
BMET318
BILE360
BHIS361
BARG362
BALA380
BASP381
BPHE382

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MS9 B 516
ChainResidue
BALA337
BLEU341
BLEU429
BILE432
BALA433
BGLY463
BPRO465

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 3
ChainResidue
BHOH151
BHOH214
BPHE359
BILE360

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 6
ChainResidue
BTYR253
BGLY321
BASN322

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues24
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGGGQYGEVYeGvwkkyslt..........VAVK
ChainResidueDetails
ALEU248-LYS271

site_idPS00109
Number of Residues13
DetailsPROTEIN_KINASE_TYR Tyrosine protein kinases specific active-site signature. FIHrDLAARNCLV
ChainResidueDetails
APHE359-VAL371

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10028","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues28
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"P00519","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsModified residue: {"description":"Phosphotyrosine; by autocatalysis and SRC-type Tyr-kinases","evidences":[{"source":"PubMed","id":"10988075","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12748290","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"9109492","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues24
DetailsMotif: {"description":"Kinase activation loop"}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P42684","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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