| Chain | GOid | namespace | contents |
| A | 0000124 | cellular_component | SAGA complex |
| A | 0004843 | molecular_function | cysteine-type deubiquitinase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| A | 0006508 | biological_process | proteolysis |
| A | 0008233 | molecular_function | peptidase activity |
| A | 0008234 | molecular_function | cysteine-type peptidase activity |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0008380 | biological_process | RNA splicing |
| A | 0016579 | biological_process | protein deubiquitination |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0046695 | cellular_component | SLIK (SAGA-like) complex |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0060090 | molecular_function | molecular adaptor activity |
| A | 0071819 | cellular_component | DUBm complex |
| B | 0000124 | cellular_component | SAGA complex |
| B | 0000932 | cellular_component | P-body |
| B | 0000973 | biological_process | post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery |
| B | 0003682 | molecular_function | chromatin binding |
| B | 0003713 | molecular_function | transcription coactivator activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005643 | cellular_component | nuclear pore |
| B | 0005654 | cellular_component | nucleoplasm |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006325 | biological_process | chromatin organization |
| B | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| B | 0006368 | biological_process | transcription elongation by RNA polymerase II |
| B | 0006406 | biological_process | mRNA export from nucleus |
| B | 0008047 | molecular_function | enzyme activator activity |
| B | 0015031 | biological_process | protein transport |
| B | 0016973 | biological_process | poly(A)+ mRNA export from nucleus |
| B | 0032880 | biological_process | regulation of protein localization |
| B | 0043229 | cellular_component | intracellular organelle |
| B | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| B | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| B | 0046695 | cellular_component | SLIK (SAGA-like) complex |
| B | 0051028 | biological_process | mRNA transport |
| B | 0070390 | cellular_component | transcription export complex 2 |
| B | 0071028 | biological_process | nuclear mRNA surveillance |
| B | 0071819 | cellular_component | DUBm complex |
| C | 0000124 | cellular_component | SAGA complex |
| C | 0003713 | molecular_function | transcription coactivator activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0006325 | biological_process | chromatin organization |
| C | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| C | 0008047 | molecular_function | enzyme activator activity |
| C | 0008270 | molecular_function | zinc ion binding |
| C | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| C | 0046695 | cellular_component | SLIK (SAGA-like) complex |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0070461 | cellular_component | SAGA-type complex |
| C | 0071819 | cellular_component | DUBm complex |
