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3MFD

The Structure of the Beta-lactamase superfamily domain of D-alanyl-D-alanine carboxypeptidase from Bacillus subtilis

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
B0006508biological_processproteolysis
B0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE CIT B 1
ChainResidue
BSER60
BHOH570
BHOH598
BHOH627
BSER92
BSER115
BLYS205
BTHR221
BGLY222
BTYR223
BHOH387
BHOH406

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE CIT A 1
ChainResidue
ASER60
ASER92
ASER115
ALYS205
ATHR221
AGLY222
ATYR223
AHOH659
AHOH758

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO B 359
ChainResidue
BHOH667

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 359
ChainResidue
AGLU162
AHIS164
AHOH573
AHOH661

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 360
ChainResidue
BARG114
BHOH552
BHOH593
BHOH753

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 360
ChainResidue
ALYS105
ATYR109
AASP183
ALYS186
AHOH527
AHOH531

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 361
ChainResidue
AHIS53
ALYS148
AASN149
AHOH695
AHOH721

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CIT A 362
ChainResidue
AARG114
ALYS203
AHOH473
AHOH623
AHOH641
BTYR136

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 363
ChainResidue
ALEU209
AMSE211
APRO214
AHOH515
AHOH538
AHOH559
AHOH726

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 361
ChainResidue
BLYS105
BTYR109
BASP183
BLYS186

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 362
ChainResidue
BTHR301
BGLU303
BHOH656

site_idBC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE CIT A 364
ChainResidue
ALYS191
AILE192
ALYS203
ATHR210
AHOH538
AHOH543
AHOH727
BTYR136
BGLU143
BARG151
BHOH427
BHOH601

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Acyl-ester intermediate => ECO:0000250
ChainResidueDetails
ASER60
BSER60

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
ALYS63
BLYS63

site_idSWS_FT_FI3
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
ASER115
BSER115

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALYS220
BLYS220

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PDB entries from 2024-05-01

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