3MDO
Crystal structure of a Putative phosphoribosylformylglycinamidine cyclo-ligase (BDI_2101) from Parabacteroides distasonis ATCC 8503 at 1.91 A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004637 | molecular_function | phosphoribosylamine-glycine ligase activity |
A | 0004641 | molecular_function | phosphoribosylformylglycinamidine cyclo-ligase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005829 | cellular_component | cytosol |
A | 0006164 | biological_process | purine nucleotide biosynthetic process |
A | 0006189 | biological_process | 'de novo' IMP biosynthetic process |
A | 0016874 | molecular_function | ligase activity |
A | 0046084 | biological_process | adenine biosynthetic process |
A | 0046872 | molecular_function | metal ion binding |
B | 0004637 | molecular_function | phosphoribosylamine-glycine ligase activity |
B | 0004641 | molecular_function | phosphoribosylformylglycinamidine cyclo-ligase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005829 | cellular_component | cytosol |
B | 0006164 | biological_process | purine nucleotide biosynthetic process |
B | 0006189 | biological_process | 'de novo' IMP biosynthetic process |
B | 0016874 | molecular_function | ligase activity |
B | 0046084 | biological_process | adenine biosynthetic process |
B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA A 389 |
Chain | Residue |
A | GLN322 |
A | HOH579 |
A | HOH580 |
A | HOH581 |
A | HOH582 |
A | HOH583 |
A | HOH584 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA A 390 |
Chain | Residue |
A | HOH552 |
B | GLU146 |
B | HOH617 |
A | ASP55 |
A | HOH519 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 391 |
Chain | Residue |
A | ASP55 |
A | ASP91 |
A | PGE403 |
A | HOH621 |
A | HOH630 |
B | HOH593 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 392 |
Chain | Residue |
A | GLU146 |
A | HOH566 |
A | HOH595 |
B | ASP55 |
B | ACT395 |
B | HOH595 |
site_id | AC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL A 393 |
Chain | Residue |
A | LYS111 |
A | GLY151 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL A 394 |
Chain | Residue |
A | ASN335 |
A | HOH451 |
A | HOH606 |
A | HOH629 |
site_id | AC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE ACT A 395 |
Chain | Residue |
A | SER105 |
A | ILE107 |
A | GLY144 |
A | GLY145 |
A | GLU146 |
A | THR147 |
A | HOH490 |
A | HOH645 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PEG A 396 |
Chain | Residue |
A | ILE29 |
A | PHE30 |
A | LYS176 |
A | HOH468 |
A | HOH558 |
B | THR387 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PEG A 397 |
Chain | Residue |
A | GLN320 |
A | ASP326 |
A | TRP327 |
A | SER328 |
A | PHE386 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PEG A 398 |
Chain | Residue |
A | GLU300 |
A | ASN301 |
A | LYS374 |
A | ASN375 |
B | GLY43 |
B | GLY44 |
B | PRO46 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG A 399 |
Chain | Residue |
A | GLY181 |
A | VAL369 |
A | PGE402 |
A | HOH435 |
site_id | BC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE PEG A 400 |
Chain | Residue |
A | LYS243 |
site_id | BC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PEG A 401 |
Chain | Residue |
A | SER170 |
A | VAL172 |
A | ILE173 |
A | ARG278 |
A | ILE281 |
A | HOH415 |
A | HOH418 |
A | HOH425 |
A | HOH596 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PGE A 402 |
Chain | Residue |
A | PHE368 |
A | PEG399 |
A | HOH574 |
B | SER217 |
B | GLY240 |
B | HOH463 |
site_id | BC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PGE A 403 |
Chain | Residue |
A | PHE34 |
A | HIS53 |
A | ASP91 |
A | LYS294 |
A | HIS297 |
A | CA391 |
B | HOH593 |
site_id | BC7 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE P6G A 404 |
Chain | Residue |
A | THR209 |
A | SER210 |
A | HIS213 |
A | ASP214 |
A | SER323 |
A | THR325 |
A | HOH438 |
A | HOH485 |
A | HOH561 |
B | HOH425 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA B 389 |
Chain | Residue |
B | HOH616 |
A | HOH588 |
B | ASP55 |
B | ASP91 |
B | ACT395 |
B | HOH522 |
B | HOH564 |
site_id | BC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA B 390 |
Chain | Residue |
B | GLN322 |
B | CAC394 |
B | HOH582 |
B | HOH583 |
B | HOH584 |
B | HOH585 |
B | HOH586 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 391 |
Chain | Residue |
B | GLY145 |
B | HOH447 |
B | HOH448 |
B | HOH449 |
B | HOH450 |
B | HOH459 |
site_id | CC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CL B 392 |
Chain | Residue |
B | LYS111 |
B | ASP149 |
B | VAL150 |
B | GLY151 |
B | HOH485 |
B | HOH598 |
site_id | CC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL B 393 |
Chain | Residue |
B | MSE203 |
B | ASN335 |
site_id | CC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CAC B 394 |
Chain | Residue |
A | ARG303 |
A | ARG385 |
B | ASP214 |
B | SER239 |
B | GLN322 |
B | SER323 |
B | CA390 |
site_id | CC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE ACT B 395 |
Chain | Residue |
A | CA392 |
B | ASP55 |
B | MSE87 |
B | ASN206 |
B | SER288 |
B | GLY289 |
B | CA389 |
B | HOH522 |
B | HOH616 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG B 396 |
Chain | Residue |
B | THR209 |
B | HIS213 |
B | ASP214 |
B | VAL232 |
site_id | CC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG B 397 |
Chain | Residue |
B | ASP40 |
B | ILE41 |
B | PRO46 |
B | HOH423 |
site_id | CC8 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE PEG B 398 |
Chain | Residue |
B | TYR195 |
site_id | CC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE PEG B 399 |
Chain | Residue |
A | THR71 |
B | LYS276 |
site_id | DC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG B 400 |
Chain | Residue |
A | ASN177 |
A | GLN179 |
B | ARG385 |
B | THR387 |
site_id | DC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PGE B 401 |
Chain | Residue |
A | MSE136 |
A | THR194 |
A | SER358 |
A | PHE359 |
B | LYS111 |
site_id | DC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PGE B 402 |
Chain | Residue |
B | PHE34 |
B | HIS53 |
B | ASP91 |
B | GLY289 |
B | LYS294 |
B | HIS297 |
site_id | DC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PGE B 403 |
Chain | Residue |
B | LEU242 |
B | GLU321 |
B | GLN322 |
site_id | DC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PG4 B 404 |
Chain | Residue |
B | GLU70 |
B | TYR219 |
B | LYS243 |
site_id | DC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PG4 B 405 |
Chain | Residue |
A | GLU132 |
A | THR194 |
B | LYS69 |
B | LYS111 |
B | LEU112 |
B | HOH484 |