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Crystal structure of a putative phosphomethylpyrimidine kinase (BT_4458) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution (rhombohedral form)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005829cellular_componentcytosol
A0008478molecular_functionpyridoxal kinase activity
A0009443biological_processpyridoxal 5'-phosphate salvage
A0016301molecular_functionkinase activity
A0042816biological_processvitamin B6 metabolic process
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 291
ChainResidue
AHIS276
AHIS276
AASP279
AASP279

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 292
ChainResidue
AASP96
AGLU131
AHIS134
AIMD297

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 293
ChainResidue
AHOH332
AHOH337
AHOH354
AHOH398
AHOH317

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 294
ChainResidue
AALA3

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 A 295
ChainResidue
AHIS218
ATYR219
APRO220
AGLY221
ATHR222
AGLY223
AHOH328
AHOH396
AHOH398
AHOH411

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 296
ChainResidue
AILE98
ALYS99
AARG102
ALYS138

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE IMD A 297
ChainResidue
AGLN92
ASER95
AASP96
AGLU131
AHIS134
AZN292

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD A 298
ChainResidue
AGLU74
AVAL75
APHE101
AGLN103

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MRD A 299
ChainResidue
AGLN179
ALEU240

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MPD A 300
ChainResidue
AARG206
ATRP208
APHE259
ATYR261
AGLU262

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MRD A 301
ChainResidue
APRO216
APHE259
ATYR287
AGLU288
ALEU289

221371

PDB entries from 2024-06-19

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