3MBH

Crystal structure of a putative phosphomethylpyrimidine kinase (BT_4458) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.00 A resolution (orthorhombic form with pyridoxal)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0003824	molecular_function	catalytic activity
A	0005524	molecular_function	ATP binding
A	0005829	cellular_component	cytosol
A	0008478	molecular_function	pyridoxal kinase activity
A	0009443	biological_process	pyridoxal 5'-phosphate salvage
A	0016301	molecular_function	kinase activity
A	0016740	molecular_function	transferase activity
A	0042816	biological_process	vitamin B6 metabolic process
A	0046872	molecular_function	metal ion binding
B	0000166	molecular_function	nucleotide binding
B	0003824	molecular_function	catalytic activity
B	0005524	molecular_function	ATP binding
B	0005829	cellular_component	cytosol
B	0008478	molecular_function	pyridoxal kinase activity
B	0009443	biological_process	pyridoxal 5'-phosphate salvage
B	0016301	molecular_function	kinase activity
B	0016740	molecular_function	transferase activity
B	0042816	biological_process	vitamin B6 metabolic process
B	0046872	molecular_function	metal ion binding
C	0000166	molecular_function	nucleotide binding
C	0003824	molecular_function	catalytic activity
C	0005524	molecular_function	ATP binding
C	0005829	cellular_component	cytosol
C	0008478	molecular_function	pyridoxal kinase activity
C	0009443	biological_process	pyridoxal 5'-phosphate salvage
C	0016301	molecular_function	kinase activity
C	0016740	molecular_function	transferase activity
C	0042816	biological_process	vitamin B6 metabolic process
C	0046872	molecular_function	metal ion binding
D	0000166	molecular_function	nucleotide binding
D	0003824	molecular_function	catalytic activity
D	0005524	molecular_function	ATP binding
D	0005829	cellular_component	cytosol
D	0008478	molecular_function	pyridoxal kinase activity
D	0009443	biological_process	pyridoxal 5'-phosphate salvage
D	0016301	molecular_function	kinase activity
D	0016740	molecular_function	transferase activity
D	0042816	biological_process	vitamin B6 metabolic process
D	0046872	molecular_function	metal ion binding
E	0000166	molecular_function	nucleotide binding
E	0003824	molecular_function	catalytic activity
E	0005524	molecular_function	ATP binding
E	0005829	cellular_component	cytosol
E	0008478	molecular_function	pyridoxal kinase activity
E	0009443	biological_process	pyridoxal 5'-phosphate salvage
E	0016301	molecular_function	kinase activity
E	0016740	molecular_function	transferase activity
E	0042816	biological_process	vitamin B6 metabolic process
E	0046872	molecular_function	metal ion binding
F	0000166	molecular_function	nucleotide binding
F	0003824	molecular_function	catalytic activity
F	0005524	molecular_function	ATP binding
F	0005829	cellular_component	cytosol
F	0008478	molecular_function	pyridoxal kinase activity
F	0009443	biological_process	pyridoxal 5'-phosphate salvage
F	0016301	molecular_function	kinase activity
F	0016740	molecular_function	transferase activity
F	0042816	biological_process	vitamin B6 metabolic process
F	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE PXL A 400

Chain	Residue
A	ASP14
A	ASP224
A	HOH303
A	SER16
A	LEU45
A	HIS48
A	THR49
A	GLN50
A	TYR84
A	VAL113
A	TYR121

---

site_id	AC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL A 291

Chain	Residue
A	ASN201
A	TRP208
A	HOH331
A	HOH354

---

site_id	AC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PXL B 400

Chain	Residue
B	ASP14
B	HIS48
B	THR49
B	GLN50
B	TYR84
B	VAL113
B	TYR121
B	ASP224
B	HOH320

---

site_id	AC4
Number of Residues	10
Details	BINDING SITE FOR RESIDUE PXL C 400

Chain	Residue
C	ASP14
C	SER16
C	LEU45
C	HIS48
C	THR49
C	GLN50
C	TYR84
C	TYR121
C	ASP224
C	HOH356

---

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL C 291

Chain	Residue
B	HOH292
C	ASN201
C	TRP208
C	HOH323

---

site_id	AC6
Number of Residues	11
Details	BINDING SITE FOR RESIDUE PXL D 400

Chain	Residue
D	ASP14
D	SER16
D	LEU45
D	HIS48
D	THR49
D	GLN50
D	TYR84
D	VAL113
D	TYR121
D	ASP224
D	HOH347

---

site_id	AC7
Number of Residues	11
Details	BINDING SITE FOR RESIDUE PXL E 400

Chain	Residue
E	ASP14
E	SER16
E	LEU45
E	HIS48
E	THR49
E	GLN50
E	TYR84
E	VAL113
E	TYR121
E	ASP224
E	HOH319

---

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL E 291

Chain	Residue
E	ASN201
E	TRP208
E	HOH297

---

site_id	AC9
Number of Residues	11
Details	BINDING SITE FOR RESIDUE PXL F 400

Chain	Residue
F	ASP14
F	SER16
F	VAL21
F	LEU45
F	HIS48
F	THR49
F	GLN50
F	TYR84
F	VAL113
F	ASP224
F	HOH427

---

site_id	BC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL F 291

Chain	Residue
F	ASN201
F	TRP208

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