Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3M8Y

Phosphopentomutase from Bacillus cereus after glucose-1,6-bisphosphate activation

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006015biological_process5-phosphoribose 1-diphosphate biosynthetic process
A0006018biological_process2-deoxyribose 1-phosphate catabolic process
A0008973molecular_functionphosphopentomutase activity
A0009117biological_processnucleotide metabolic process
A0016853molecular_functionisomerase activity
A0030145molecular_functionmanganese ion binding
A0043094biological_processcellular metabolic compound salvage
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003824molecular_functioncatalytic activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006015biological_process5-phosphoribose 1-diphosphate biosynthetic process
B0006018biological_process2-deoxyribose 1-phosphate catabolic process
B0008973molecular_functionphosphopentomutase activity
B0009117biological_processnucleotide metabolic process
B0016853molecular_functionisomerase activity
B0030145molecular_functionmanganese ion binding
B0043094biological_processcellular metabolic compound salvage
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0003824molecular_functioncatalytic activity
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006015biological_process5-phosphoribose 1-diphosphate biosynthetic process
C0006018biological_process2-deoxyribose 1-phosphate catabolic process
C0008973molecular_functionphosphopentomutase activity
C0009117biological_processnucleotide metabolic process
C0016853molecular_functionisomerase activity
C0030145molecular_functionmanganese ion binding
C0043094biological_processcellular metabolic compound salvage
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 395
ChainResidue
ATPO85
AASP156
AASP286
AHIS291
AHIS339

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN A 396
ChainResidue
AASP13
ATPO85
AASP327
AHIS328

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 397
ChainResidue
AGLY27
AASP28
AHIS334
AHOH534
AHOH680
AHOH681

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 398
ChainResidue
APRO351
ALYS354
AHOH443
AHOH559

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 399
ChainResidue
ATHR74
AGLU359
ALEU360

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 400
ChainResidue
AGLY18
AGLU19
AGLY30
ASER31
AHOH451

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 401
ChainResidue
ALEU362
AARG363
AGLN364
AASP368
AHOH460

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 402
ChainResidue
ALYS3
AGLU318
ASER352
AHOH753

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS A 403
ChainResidue
ATYR96
AHOH567
AHOH658

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 395
ChainResidue
BTPO85
BASP156
BASP286
BHIS291
BHIS339

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN B 396
ChainResidue
BASP13
BTPO85
BASP327
BHIS328

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN B 397
ChainResidue
BHOH541
BHOH615

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 398
ChainResidue
BGLY27
BASP28
BHIS334
BHOH411
BHOH621
BHOH755

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ACT B 399
ChainResidue
BARG6
BLEU270
BASN271
BMET272
BASP273
BLYS317
BHOH661
BHOH712

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT B 400
ChainResidue
BASP114
BGLU117
BILE124
BHOH633

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 401
ChainResidue
BASP264
BHOH483
BHOH501
BHOH631
BHOH750

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 402
ChainResidue
ATYR174
AASN211
AHIS213
BTHR120
BGLY121
BARG122
BHOH682

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 403
ChainResidue
BASP234
BGLU252
BASP273
BHOH471
CASN211
CARG212

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN C 395
ChainResidue
CTPO85
CASP156
CASP286
CHIS291
CHIS339

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN C 396
ChainResidue
CASP13
CTPO85
CASP327
CHIS328

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN C 397
ChainResidue
CHOH477
CHOH708
CGLY27
CASP28
CHIS334
CHOH431

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT C 398
ChainResidue
AGLU39
CASP171
CGLU172

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS C 399
ChainResidue
CASP214
CASP243
CARG255

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00740
ChainResidueDetails
AASP13
BASP327
BHIS328
BHIS339
CASP13
CASP286
CHIS291
CASP327
CHIS328
CHIS339
AASP286
AHIS291
AASP327
AHIS328
AHIS339
BASP13
BASP286
BHIS291

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon