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3M8S

Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-methylated dTTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HXB A 113
ChainResidue
AMG1
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
ALYS663
ATHR664
APHE667
AASP785
AMG2
BDOC112
CDA204
CDG205
AHOH36
AHOH68
AHOH77
AHOH111
AARG573
AASP610
ATYR611

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 1
ChainResidue
AMG2
AHOH68
AHXB113
AASP610
AASP785
AHOH840
BDOC112

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 2
ChainResidue
AMG1
AHXB113
AASP610
ATYR611
AASP785

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 833
ChainResidue
AGLY672
AARG746
CDA203

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 834
ChainResidue
AARG425
ATRP428
ALEU723
APHE724
ATYR811

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE 15P A 835
ChainResidue
ATHR544
APRO579
AASN580
AASN583
CHOH88
CDC209
CDC210

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 836
ChainResidue
AARG313
ATRP318
ALEU552

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 837
ChainResidue
AASP452
ATYR455
ATYR455
AARG596
AILE599

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 3
ChainResidue
AARG728
ATYR729
AVAL730
CACT4

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 3
ChainResidue
BDG107
BDG108

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 1
ChainResidue
CHOH31
CDG205
CDG206
CDC207

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT C 4
ChainResidue
AACT3
AARG728
CDG206
CDC207

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-07-17

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