Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3M6Z

Crystal structure of an N-terminal 44 kDa fragment of topoisomerase V in the presence of guanidium hydrochloride

Functional Information from GO Data
ChainGOidnamespacecontents
A0043565molecular_functionsequence-specific DNA binding
B0043565molecular_functionsequence-specific DNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A 381
ChainResidue
AARG108
AHOH630
AARG131
AARG144
AARG293
ASER322
AHOH428
AHOH463
AHOH465
AHOH538

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 382
ChainResidue
AARG42
ALEU269
AARG270
AHIS271
AHOH599

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 383
ChainResidue
AARG14
AARG37
ALYS47
ALYS134
AARG135
AGLN292

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 384
ChainResidue
ASER210
AVAL211
AVAL349
AASN350
AARG351

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 385
ChainResidue
AGLU266
ALEU269
AHOH494
AHOH495
BGLU15

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A 386
ChainResidue
ASER12
AGLU13
AARG14
AGLU50
ALEU53
AHOH513

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 387
ChainResidue
AVAL4
ATYR5
ALYS116

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GAI A 388
ChainResidue
AVAL133
ALYS134
AARG293
AHOH440
AHOH463
AHOH482
AHOH630
AHOH646

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GAI A 389
ChainResidue
AASP160
AVAL162
BGLU51
BGLU54

site_idBC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 B 381
ChainResidue
BARG108
BARG131
BVAL133
BARG144
BARG293
BSER322
BSER324
BMG385
BHOH445
BHOH449
BHOH471

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 B 382
ChainResidue
BARG37
BVAL133
BLYS134
BARG135
BARG293
BHOH438
BHOH496
BHOH666

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 B 383
ChainResidue
BTYR30
BARG37
BARG108
BGLU129
BARG131
BALA132
BTYR289
BARG293

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 B 384
ChainResidue
BARG172
BARG176
BHOH562

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 385
ChainResidue
BASP201
BSER322
BILE323
BSER324
BPO4381
BHOH449
BHOH485

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GAI B 386
ChainResidue
AVAL10
AASP75
AHOH614
BGLU169
BARG172

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon