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3M6P

Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with actinonin

Functional Information from GO Data
ChainGOidnamespacecontents
A0042586molecular_functionpeptide deformylase activity
B0042586molecular_functionpeptide deformylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BB2 A 194
ChainResidue
AGLY41
ATYR98
AHIS133
AGLU134
AHIS137
AZN195
AHOH293
AILE42
AGLY43
AGLN48
APHE87
AASP88
AGLY90
ACYS91
ALEU92

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 195
ChainResidue
AGLN48
ACYS91
AHIS133
AHIS137
ABB2194

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 196
ChainResidue
AGLU63
AHOH439
BLYS38

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 197
ChainResidue
AMET1
AGLU160
AGLU179
BGLU66

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 198
ChainResidue
AASP30
AASP34
AZN199
BGLU69

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 199
ChainResidue
AASP30
AASP34
AZN198
BASP30
BASP34
BZN198

site_idAC7
Number of Residues13
DetailsBINDING SITE FOR RESIDUE BB2 B 194
ChainResidue
BGLY41
BILE42
BGLY43
BGLN48
BASP88
BGLY90
BCYS91
BLEU92
BTYR98
BHIS133
BGLU134
BHIS137
BZN195

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 195
ChainResidue
BGLN48
BCYS91
BHIS133
BHIS137
BBB2194

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ZN B 196
ChainResidue
ALYS38
BGLU63

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 197
ChainResidue
AGLU66
BMET1
BGLU160
BGLU179

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 198
ChainResidue
AGLU69
AZN199
BASP30
BASP34

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
AGLU134
BGLU134

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING:
ChainResidueDetails
ACYS91
AHIS133
AHIS137
BCYS91
BHIS133
BHIS137

222036

PDB entries from 2024-07-03

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