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3M47

Crystal structure of the mutant I218A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016829molecular_functionlyase activity
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 229
ChainResidue
AASP70
ALYS72
AILE96

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 230
ChainResidue
AGLY32
AARG35
AARG62
APHE63
AGLU114

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 231
ChainResidue
AARG168
AGLN173
ASER175
APHE195
AASP197
AHOH234
AHOH340
AARG5

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 229
ChainResidue
BARG5
BARG168
BGLN173
BSER175
BARG194
BPHE195
BASP197
BHOH311
BHOH330

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 230
ChainResidue
BLYS42
BASP70
BLYS72

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 231
ChainResidue
BGLY32
BARG35
BARG62
BPHE63
BGLU114

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton donor"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues28
DetailsBinding site: {}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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