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3M41

Crystal structure of the mutant V182A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 229
ChainResidue
AMET12
AHOH338
AILE38
AASP39
APHE63
AGLY64
ACYS65
AARG107
AASN111
AHOH270

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 230
ChainResidue
AARG5
AARG168
AGLN173
APHE195
AASP197
AHOH380
AHOH392

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 229
ChainResidue
AVAL48
ALEU49
AGLY52
AMET53
BVAL48
BLEU49
BGLY52
BMET53
BHOH268
BHOH276

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 230
ChainResidue
BARG5
BARG168
BGLN173
BPHE195
BASP197
BHOH232
BHOH234

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL B 231
ChainResidue
BMET12
BARG35
BILE38
BASP39
BPHE63
BGLY64
BCYS65
BARG107
BASN111
BHOH261
BHOH314

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BASP70
BSER127
BPRO180
BGLY202
BARG203
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP20
BLYS42

219140

PDB entries from 2024-05-01

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