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3M1U

Crystal structure of a Putative gamma-D-glutamyl-L-diamino acid endopeptidase (DVU_0896) from DESULFOVIBRIO VULGARIS HILDENBOROUGH at 1.75 A resolution

Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1
ChainResidue
AACT13
AGLN182
AARG183
ATRP324
AASP332
AHOH548
AHOH631
AHOH950

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 3
ChainResidue
ATHR184
AALA185
ATRP187
ASER335
AARG338
AASP339
AARG350
AHOH465
AHOH557
AHOH26

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 4
ChainResidue
AASP243
AHIS258
AGLN320
AGLU329
AARG331
AHOH568
BARG163

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 8
ChainResidue
ACL23
AHIS392
AMSE410
ATRP411
AGLY412
AARG452
AHOH658
AHOH799

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 10
ChainResidue
AGLU45
AGLY46
AARG423
ATYR424
AVAL425
AHOH682
AHOH850
BLEU122

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 13
ChainResidue
AGOL1
ACYS333
ASER334
ASER352
AHOH477

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MES A 14
ChainResidue
AGLY173
APHE178
AMSE180
ATRP324
AARG423
AHOH603
AHOH623
AHOH678
AHOH799

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 17
ChainResidue
AASP68
AARG69

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 18
ChainResidue
AARG87
ATRP347
APRO349
AHOH470

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 21
ChainResidue
AGLY173
ATRP411

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 23
ChainResidue
AGOL8
AILE413
AARG414
AARG452
AHOH668

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 2
ChainResidue
BACT12
BGLN182
BARG183
BTRP324
BASP332
BASN351
BHOH603
BHOH649

site_idBC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 5
ChainResidue
BHOH25
BTHR184
BALA185
BTRP187
BSER335
BARG338
BASP339
BARG350
BHOH468
BHOH513

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 6
ChainResidue
AARG163
BASP242
BASP243
BHIS258
BGLN320
BGLU329
BARG331
BHOH575
BHOH624

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 7
ChainResidue
BVAL425
BHOH824
BGLU45
BGLY46
BARG423
BTYR424

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 9
ChainResidue
BMES15
BHIS392
BMSE410
BTRP411
BGLY412
BLEU449
BARG452
BHOH690
BHOH786

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 11
ChainResidue
BGLN56
BASP57
BARG59
BASP139
BTYR141
BASN315
BHOH515

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT B 12
ChainResidue
BGOL2
BCYS333
BSER334
BASN351
BSER352
BHOH489

site_idCC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MES B 15
ChainResidue
BGOL9
BGLY173
BPHE178
BTRP324
BTRP411
BARG414
BARG423
BHOH625
BHOH786

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 16
ChainResidue
BALA209
BTRP347

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 19
ChainResidue
BLYS64
BHIS400
BGLU401

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 20
ChainResidue
BGLY437
BASN443
BGLY448
BLEU449

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 22
ChainResidue
BGLY173
BTRP411
BARG423

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 24
ChainResidue
BGLY66
BALA67
BASP68
BARG69

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PDB entries from 2024-10-30

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