Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3LZD

Crystal structure of Dph2 from Pyrococcus horikoshii with 4Fe-4S cluster

Functional Information from GO Data
ChainGOidnamespacecontents
A0016740molecular_functiontransferase activity
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
A0017183biological_processprotein histidyl modification to diphthamide
A0046872molecular_functionmetal ion binding
A0050843biological_processS-adenosylmethionine catabolic process
A0051536molecular_functioniron-sulfur cluster binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
A0090560molecular_function2-(3-amino-3-carboxypropyl)histidine synthase activity
B0016740molecular_functiontransferase activity
B0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
B0017183biological_processprotein histidyl modification to diphthamide
B0046872molecular_functionmetal ion binding
B0050843biological_processS-adenosylmethionine catabolic process
B0051536molecular_functioniron-sulfur cluster binding
B0051539molecular_function4 iron, 4 sulfur cluster binding
B0090560molecular_function2-(3-amino-3-carboxypropyl)histidine synthase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SF4 A 343
ChainResidue
ACYS59
AARG153
ACYS163
ACYS287
ASO4344

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 344
ChainResidue
ASF4343
ALEU161
AGLY162
AHIS184
AARG289

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SF4 B 343
ChainResidue
BTYR56
BCYS59
BCYS163
BCYS287
BSO4344

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 344
ChainResidue
BLEU161
BGLY162
BHIS184
BARG289
BSF4343
BHOH408

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 345
ChainResidue
AARG32
BGLY148
BARG149
BHOH440
BHOH444

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SriswpgqvlGcnYSVAKVRGeGILfIGS
ChainResidueDetails
ASER152-SER180

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {}
ChainResidueDetails

246333

PDB entries from 2025-12-17

PDB statisticsPDBj update infoContact PDBjnumon