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3LWM

Structure of the large fragment of thermus aquaticus DNA polymerase I in complex with a blunt-ended DNA and ddATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DDS A 1
ChainResidue
AHOH46
AMG835
AHOH844
BGOL1
B2DA112
AHOH166
AARG587
AGLN613
AHIS639
AARG659
ALYS663
APHE667
ATYR671

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 833
ChainResidue
AARG313
AASP551

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 2
ChainResidue
ATHR447
AARG778

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 834
ChainResidue
ALEU311
AGLU400
AARG405

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 4
ChainResidue
AHOH141
AHOH160
ATHR544
ATYR545
APRO579
AASN580
AASN583
CDC209
CDC210

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 835
ChainResidue
ADDS1
AHOH46
AHOH166
AASP610

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 836
ChainResidue
AGLU615
ATYR671
AASN750
AGLN754

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA A 837
ChainResidue
AGLY510
AARG741
AGLU745

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NA A 5
ChainResidue
AGLU774

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA A 6
ChainResidue
AHOH112
ALYS354
AASP355

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 2
ChainResidue
AHOH149
AARG536
ALYS540
BDG107
BDG108
BDC109

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 3
ChainResidue
BDG107
BDG108
CHOH9
CDC209

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1
ChainResidue
ADDS1
AASP610
AGLU786
AHOH843
AHOH844
B2DA112

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT C 4
ChainResidue
CDG206
CDC207

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

218853

PDB entries from 2024-04-24

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