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3LWL

Structure of Klenow fragment of Taq polymerase in complex with an abasic site

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE DDS A 1
ChainResidue
AARG587
AHOH846
B2DA112
AGLN613
AHIS639
AARG659
ALYS663
APHE667
ATYR671
AMG833
AHOH845

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 833
ChainResidue
ADDS1
AGLU820
AHOH845
AHOH846

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 3
ChainResidue
AARG313
ALEU552

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 5
ChainResidue
ALYS542
ASER543
AASP547
CHOH92

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 834
ChainResidue
ATHR544
ATYR545
APRO579
AASN580
AASN583
CHOH7
CDC209
CDC210

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 835
ChainResidue
AARG425
ATRP428
APHE724

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 836
ChainResidue
AHOH53
AHOH69
AHOH100
AHOH126
ALYS354
AASP355
AARG563
APHE564
AASN565
AGLN566

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 6
ChainResidue
AGLU315
APRO316
AMET317
AGLU445
AHIS561
ATHR562
AARG563
AASP578

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 7
ChainResidue
AVAL737
ASER739
ASER739

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 837
ChainResidue
APRO316
ALYS354
AASP355
AGLU445
AARG563

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA A 838
ChainResidue
ALYS314
AASP578
CDC209

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA A 839
ChainResidue
AASP381
ASER383

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA A 4
ChainResidue
AALA568
CDC207

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 4
ChainResidue
BHOH35
BHOH55
BDC106
BDG107
BDG108
BHOH113
BHOH161
CDC209

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 8
ChainResidue
AHOH123
ALYS540
BDG107
BDG108
BDC109
BHOH155
CACT6
CHOH81

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT C 1
ChainResidue
AARG728
CDG206
CDC207

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE ACT C 6
ChainResidue
AASN485
ASER486
AARG487
BGOL8
BHOH60
BHOH119
CHOH128
CDG211
CDT212

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-08-14

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