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3LS6

Crystal structure of 3,4-Dihydroxy-2-butanone 4-phosphate synthase in complex with sulfate and zinc

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005829cellular_componentcytosol
A0008686molecular_function3,4-dihydroxy-2-butanone-4-phosphate synthase activity
A0009231biological_processriboflavin biosynthetic process
A0016829molecular_functionlyase activity
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0005829cellular_componentcytosol
B0008686molecular_function3,4-dihydroxy-2-butanone-4-phosphate synthase activity
B0009231biological_processriboflavin biosynthetic process
B0016829molecular_functionlyase activity
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 300
ChainResidue
AARG37
AGLU38
AARG150
AGLY152
AHIS153
ATHR154
AZN303
AHOH402
AHOH612

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 303
ChainResidue
AGLU38
AHIS153
ASO4300
AHOH400
AHOH402

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ZN A 308
ChainResidue
AHIS136
AHOH617
BGLU174
BHOH614
BHOH616
BHOH671
BHOH782

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 309
ChainResidue
AHIS61
AHIS195
AHOH621
AHOH622
AHOH623
AHOH624

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 311
ChainResidue
AASP130
AHOH567
AHOH568
AHOH569
AHOH570

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 312
ChainResidue
AGLU38
AHOH610
AHOH612
BZN310
BHOH611
BHOH618

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 800
ChainResidue
AARG60
AHIS61
ALEU175
ATHR176
AASN177
AASP178

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 301
ChainResidue
BARG37
BGLU38
BTHR93
BARG150
BGLY152
BHIS153
BTHR154
BZN304
BHOH403

site_idAC9
Number of Residues13
DetailsBINDING SITE FOR RESIDUE SO4 B 302
ChainResidue
BTHR71
BGLU72
BGLU72
BASP73
BASP73
BLYS76
BALA144
BZN305
BZN305
BHOH423
BHOH483
BHOH483
BHOH584

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 304
ChainResidue
BGLU38
BHIS153
BSO4301
BHOH403
BHOH783

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 305
ChainResidue
BASP73
BASP73
BSO4302
BSO4302

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN B 306
ChainResidue
BHIS195
BHOH595
BHOH596

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 307
ChainResidue
AGLU14
BHIS61
BZN313
BHOH613
BHOH772

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 310
ChainResidue
AGLU174
AMG312
AHOH610
AHOH620
BHIS136
BHOH618

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 313
ChainResidue
AGLU14
BLEU57
BHIS61
BHIS195
BZN307
BHOH772

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ZN B 314
ChainResidue
BHIS212
BHOH598

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00180","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsSite: {"description":"Essential for catalytic activity","evidences":[{"source":"HAMAP-Rule","id":"MF_00180","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

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PDB entries from 2025-12-10

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