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3LDV

1.77 Angstrom resolution crystal structure of orotidine 5'-phosphate decarboxylase from Vibrio cholerae O1 biovar eltor str. N16961

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016829molecular_functionlyase activity
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 232
ChainResidue
AASP26
AHOH330
AHOH487
AHOH516

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 233
ChainResidue
APRO67
AASN68

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 234
ChainResidue
AGLU220
AILE25
AASP26
ATHR29

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 232
ChainResidue
BPRO67
BASN68

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 233
ChainResidue
BGLY107
BLYS108
BGLN128
BHOH328

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. VFlDlKfhDIPnTC
ChainResidueDetails
AVAL57-CYS70

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_01200
ChainResidueDetails
ALYS62
BLYS62

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01200
ChainResidueDetails
AASP11
BLYS33
BASP60
BTHR120
BARG181
BGLN190
BGLY210
BARG211
ALYS33
AASP60
ATHR120
AARG181
AGLN190
AGLY210
AARG211
BASP11

218853

PDB entries from 2024-04-24

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