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3LA4

Crystal structure of the first plant urease from Jack bean (Canavalia ensiformis)

Functional Information from GO Data
ChainGOidnamespacecontents
A0009039molecular_functionurease activity
A0016151molecular_functionnickel cation binding
A0016787molecular_functionhydrolase activity
A0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
A0035550cellular_componenturease complex
A0035821biological_processmodulation of process of another organism
A0043419biological_processurea catabolic process
A0046872molecular_functionmetal ion binding
A0090729molecular_functiontoxin activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NI A 841
ChainResidue
AHIS407
AHIS409
AKCX490
AASP633
ANI842
APO4843

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NI A 842
ChainResidue
AHIS545
AGLY550
ANI841
APO4843
AKCX490
AHIS492
AHIS519

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE PO4 A 843
ChainResidue
AHIS407
AHIS409
AALA440
AKCX490
AHIS492
AHIS519
AHIS545
AGLY550
AASP633
AALA636
ANI841
ANI842
APO4844

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 844
ChainResidue
AHIS492
AGLU493
AASP494
AHIS519
AHIS593
AARG609
APO4843

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACN A 845
ChainResidue
AARG222

Functional Information from PROSITE/UniProt
site_idPS00145
Number of Residues17
DetailsUREASE_2 Urease active site. MVCHHLdreIpeDLaFA
ChainResidueDetails
AMET590-ALA606

site_idPS01120
Number of Residues14
DetailsUREASE_1 Urease nickel ligands signature. TAGAIDcHVHyicP
ChainResidueDetails
ATHR400-PRO413

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues5
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20471401","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3LA4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4GOA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4GY7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4H9M","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"description":"via carbamate group","evidences":[{"source":"PubMed","id":"20471401","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3LA4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4GOA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4GY7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4H9M","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"N6-carboxylysine","evidences":[{"source":"PubMed","id":"20471401","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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