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3L8F

Crystal Structure of D,D-heptose 1.7-bisphosphate phosphatase from E. Coli complexed with magnesium and phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005975biological_processcarbohydrate metabolic process
A0008270molecular_functionzinc ion binding
A0009103biological_processlipopolysaccharide biosynthetic process
A0009244biological_processlipopolysaccharide core region biosynthetic process
A0016787molecular_functionhydrolase activity
A0016791molecular_functionphosphatase activity
A0034200molecular_functionD-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase activity
A0046872molecular_functionmetal ion binding
A0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
AASP11
AASP13
AASP136
ALYS137
AHOH291
APO4601

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
ACYS109
AARG110
ACYS92
AHIS94
ACYS107

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 601
ChainResidue
AASP11
AARG12
AASP13
ATHR53
AASN54
ALYS111
ALYS137
AHOH207
AMG401

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"20050699","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"PubMed","id":"20050614","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20050699","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues5
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20050614","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20050699","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20050614","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsSite: {"description":"Stabilizes the phosphoryl group","evidences":[{"source":"PubMed","id":"20050614","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20050699","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsSite: {"description":"Contributes to substrate recognition","evidences":[{"source":"PubMed","id":"20050614","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsSite: {"description":"Stabilizes the phosphoryl group","evidences":[{"source":"PubMed","id":"20050614","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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