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3L0S

Crystal structures of Zinc, Cobalt and Iron containing Adenylate kinase from Gram-negative bacteria Desulfovibrio gigas

Functional Information from GO Data
ChainGOidnamespacecontents
A0004017molecular_functionadenylate kinase activity
A0004550molecular_functionnucleoside diphosphate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006139biological_processnucleobase-containing compound metabolic process
A0009123biological_processnucleoside monophosphate metabolic process
A0009132biological_processnucleoside diphosphate metabolic process
A0009165biological_processnucleotide biosynthetic process
A0016301molecular_functionkinase activity
A0019205molecular_functionnucleobase-containing compound kinase activity
A0044209biological_processAMP salvage
A0046872molecular_functionmetal ion binding
A0046940biological_processnucleoside monophosphate phosphorylation
A0050145molecular_functionnucleoside monophosphate kinase activity
C0004017molecular_functionadenylate kinase activity
C0004550molecular_functionnucleoside diphosphate kinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006139biological_processnucleobase-containing compound metabolic process
C0009123biological_processnucleoside monophosphate metabolic process
C0009132biological_processnucleoside diphosphate metabolic process
C0009165biological_processnucleotide biosynthetic process
C0016301molecular_functionkinase activity
C0019205molecular_functionnucleobase-containing compound kinase activity
C0044209biological_processAMP salvage
C0046872molecular_functionmetal ion binding
C0046940biological_processnucleoside monophosphate phosphorylation
C0050145molecular_functionnucleoside monophosphate kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CO A 224
ChainResidue
ACYS129
AHIS135
ACYS151
ACYS154

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE TAR A 225
ChainResidue
ALYS13
AARG126
AHOH417
AHOH440
AHOH482
AHOH499
CASN131
CASN132
CHOH243
APRO8
AASN9
AGLY10
ASER11
AGLY12

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CO C 224
ChainResidue
CCYS129
CHIS135
CCYS151
CCYS154

site_idAC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE TAR C 225
ChainResidue
AASN131
AASN132
CPRO8
CASN9
CGLY10
CSER11
CGLY12
CLYS13
CGLY14
CARG126
CHOH293
CHOH308
CHOH416
CHOH428

Functional Information from PROSITE/UniProt
site_idPS00113
Number of Residues12
DetailsADENYLATE_KINASE Adenylate kinase signature. WLLDGFPRntvQ
ChainResidueDetails
ATRP80-GLN91

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PDB entries from 2024-07-17

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