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3KYG

Crystal structure of VCA0042 (L135R) complexed with c-di-GMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003674molecular_functionmolecular_function
A0005515molecular_functionprotein binding
A0005575cellular_componentcellular_component
A0008150biological_processbiological_process
A0009288cellular_componentbacterial-type flagellum
A0009425cellular_componentbacterial-type flagellum basal body
A0035438molecular_functioncyclic-di-GMP binding
B0000166molecular_functionnucleotide binding
B0003674molecular_functionmolecular_function
B0005515molecular_functionprotein binding
B0005575cellular_componentcellular_component
B0008150biological_processbiological_process
B0009288cellular_componentbacterial-type flagellum
B0009425cellular_componentbacterial-type flagellum basal body
B0035438molecular_functioncyclic-di-GMP binding
Functional Information from PDB Data
site_idAC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 5GP A 501
ChainResidue
AARG136
A5GP503
A5GP504
BSER212
AARG140
AARG169
AASN208
AGLN210
AHOH260
AHOH269
AHOH281
A5GP502

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE 5GP A 502
ChainResidue
AARG99
AGLY100
AGLN134
AARG135
AARG136
AHOH257
AHOH290
AHOH306
A5GP501
A5GP504

site_idAC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 5GP A 503
ChainResidue
AARG140
AASP162
ASER164
ASER166
AGLY167
ACYS168
AARG169
ACYS207
AASN208
AGLY219
ALEU220
AGLU221
AHOH274
AHOH325
AHOH327
AHOH355
A5GP501
A5GP504

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 5GP A 504
ChainResidue
AHOH10
AGLU101
AARG135
AARG136
ALYS137
AARG140
A5GP501
A5GP502
A5GP503

site_idAC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE 5GP B 501
ChainResidue
ASER212
AHIS214
BARG136
BARG140
BARG169
BASN208
BGLN210
BHOH264
BHOH288
BHOH335
B5GP502
B5GP503
B5GP504

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE 5GP B 502
ChainResidue
BARG99
BGLY100
BGLN134
BARG135
BARG136
BHOH258
BHOH318
BHOH332
BHOH341
BHOH364
BHOH371
B5GP501
B5GP504

site_idAC7
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 5GP B 503
ChainResidue
AHIS214
BARG140
BASP162
BSER164
BSER166
BGLY167
BCYS168
BARG169
BCYS207
BASN208
BGLY219
BLEU220
BGLU221
BHOH282
BHOH295
B5GP501
B5GP504

site_idAC8
Number of Residues11
DetailsBINDING SITE FOR RESIDUE 5GP B 504
ChainResidue
BHOH281
B5GP501
B5GP502
B5GP503
AHIS214
BGLU101
BARG135
BARG136
BLYS137
BARG140
BHOH257

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PDB entries from 2024-07-17

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