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3KVH

Crystal structure of human protein syndesmos (NUDT16-like protein)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0006402biological_processmRNA catabolic process
A0016077biological_processsno(s)RNA catabolic process
A0030515molecular_functionsnoRNA binding
A0042803molecular_functionprotein homodimerization activity
A0140933molecular_function5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity
A1990174molecular_functionphosphodiesterase decapping endonuclease activity
A2001033biological_processnegative regulation of double-strand break repair via nonhomologous end joining
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1
ChainResidue
ALEU188
AVAL189
ALEU192
AHOH327

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 219
ChainResidue
AARG43
AGLN150
ALYS151

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues87
DetailsRegion: {"description":"Interaction with PXN","evidences":[{"source":"UniProtKB","id":"Q8VHN8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsSite: {"description":"Required for interaction with TP53BP1","evidences":[{"source":"PubMed","id":"28241136","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"28241136","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

238582

PDB entries from 2025-07-09

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